PDB entry 6p9j

View 6p9j on RCSB PDB site
Description: crystal structure of human anti staphylococcus aureus antibody STAU-229 Fab
Class: immune system
Keywords: human antibody, Fab, IMMUNE SYSTEM
Deposited on 2019-06-10, released 2020-06-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-01-06, with a file datestamp of 2021-01-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: human anti staphylococcus aureus antibody STAU-229 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P9J (0-End)
    Domains in SCOPe 2.08: d6p9ja_
  • Chain 'B':
    Compound: human anti staphylococcus aureus antibody STAU-229 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P9J
    Domains in SCOPe 2.08: d6p9jb1, d6p9jb2
  • Chain 'H':
    Compound: human anti staphylococcus aureus antibody STAU-229 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P9J (0-End)
    Domains in SCOPe 2.08: d6p9jh_
  • Chain 'L':
    Compound: human anti staphylococcus aureus antibody STAU-229 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P9J
    Domains in SCOPe 2.08: d6p9jl1, d6p9jl2
  • Heterogens: TAM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6p9jA (A:)
evqlvqsgaevkkpgatmkisckvsgypftdyymhwvqqapgkglewmglidpedgetny
aekfqgrvtitadtstdtvymelsslrsedtavyfcakphcssrtcqrvsgyyfgmdvwg
qgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvh
tfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

    Sequence, based on observed residues (ATOM records): (download) 
    >6p9jA (A:)
evqlvqsgaevkkpgatmkisckvsgypftdyymhwvqqapgkglewmglidpedgetny
aekfqgrvtitadtstdtvymelsslrsedtavyfcakphcssrtcqrvsgyyfgmdvwg
qgtlvtvssastkgpsvfplapalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtqtyicnvnhkpsntkvdkkve

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6p9jB (B:)
qsaltqppsasgspgqsvtisctgssndvgdynfvswyqqhpgkppklmiyevtkrpsgv
pdrffgsksgntasltvsglqaddeadyycssyaggnsvvfgggtkltvlgqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >6p9jB (B:)
altqppsasgspgqsvtisctgynfvswyqqhpgkppklmiyevtkrpsgvpdrffgsks
gntasltvsglqaddeadyycssyaggnsvvfgggtkltvlgqpkaapsvtlfppsseel
qankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassylsltpeqw
kshrsyscqvthegstvektvap

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6p9jH (H:)
evqlvqsgaevkkpgatmkisckvsgypftdyymhwvqqapgkglewmglidpedgetny
aekfqgrvtitadtstdtvymelsslrsedtavyfcakphcssrtcqrvsgyyfgmdvwg
qgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvh
tfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

    Sequence, based on observed residues (ATOM records): (download) 
    >6p9jH (H:)
evqlvqsgaevkkpgatmkisckvsgypftdyymhwvqqapgkglewmglidpedgetny
aekfqgrvtitadtstdtvymelsslrsedtavyfcakphcssrtcqrvsgyyfgmdvwg
qgtlvtvssastkgpsvfplapsalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtqtyicnvnhkpsntkvdkkve

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6p9jL (L:)
qsaltqppsasgspgqsvtisctgssndvgdynfvswyqqhpgkppklmiyevtkrpsgv
pdrffgsksgntasltvsglqaddeadyycssyaggnsvvfgggtkltvlgqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >6p9jL (L:)
altqppsasgspgqsvtisctgssndvgdynfvswyqqhpgkppklmiyevtkrpsgvpd
rffgsksgntasltvsglqaddeadyycssyaggnsvvfgggtkltvlgqpkaapsvtlf
ppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassyl
sltpeqwkshrsyscqvthegstvektvap