PDB entry 6p8n

View 6p8n on RCSB PDB site
Description: crystal structure of antibody p-p1f1 in complex with eod-gt8
Deposited on 2019-06-07, released 2019-11-20
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Env outer domain eOD-GT8
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P8N
  • Chain 'B':
    Compound: P-p1f1 Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P8N (0-End)
  • Chain 'C':
    Compound: Env outer domain eOD-GT8
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P8N
  • Chain 'D':
    Compound: P-p1f1 Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P8N
  • Chain 'H':
    Compound: P-p1f1 Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P8N (0-End)
  • Chain 'L':
    Compound: P-p1f1 Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P8N
  • Heterogens: NAG, NH4, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6p8nA (A:)
dtitlpcrpappphcssnitgliltrqggysndntvifrpsggdwrdiarcqiagtvvst
qlflngslaeeevvirsedwrdnaksicvqlntsveinctgaghcnisrakwnntlkqia
sklreqygnktiifkpssggdpefvnhsfncggeffycdstqlfnstwfnstgsgsghhh
hhh

    Sequence, based on observed residues (ATOM records):
    >6p8nA (A:)
titlpcrpappphcssnitgliltrqggysndntvifrpsggdwrdiarcqiagtvvstq
lflngslaeeevvirsedwrdnaksicvqlntsveinctgaghcnisrakwnntlkqias
klreqygnktiifkpssggdpefvnhsfncggeffycdstqlfnstwf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6p8nB (B:)
qvqlvqsgaevkkpgasvkvsckasgytftgyymnwvrqapgqglewmgwinpnsggtny
aqkfqgrvtmtrdtsistaymelsrlrsddtavyycargknsdynwdfqhwgqgtlvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdk

    Sequence, based on observed residues (ATOM records):
    >6p8nB (B:)
qvqlvqsgaevkkpgasvkvsckasgytftgyymnwvrqapgqglewmgwinpnsggtny
aqkfqgrvtmtrdtsistaymelsrlrsddtavyycargknsdynwdfqhwgqgtlvtvs
sastkgpsvfplapssksggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6p8nC (C:)
dtitlpcrpappphcssnitgliltrqggysndntvifrpsggdwrdiarcqiagtvvst
qlflngslaeeevvirsedwrdnaksicvqlntsveinctgaghcnisrakwnntlkqia
sklreqygnktiifkpssggdpefvnhsfncggeffycdstqlfnstwfnstgsgsghhh
hhh

    Sequence, based on observed residues (ATOM records):
    >6p8nC (C:)
itlpcrpappphcssnitgliltrqggysndntvifrpsggdwrdiarcqiagtvvstql
flngslaeeevvirsedwrdnaksicvqlntsveinctgaghcnisrakwnntlkqiask
lreqygnktiifkpssggdpefvnhsfncggeffycdstqlfnstwf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6p8nD (D:)
divmsqspsslavsvgekvtmsckssqsllyssnqknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltissvkaedlavyycqqyemfgggtkleikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records):
    >6p8nD (D:)
ivmsqspsslavsvgekvtmsckssknylawyqqkpgqspklliywastresgvpdrftg
sgsgtdftltissvkaedlavyycqqyemfgggtkleikrtvaapsvfifppsdeqlksg
tasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlskadyek
hkvyacevthqglsspvtksfnr

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6p8nH (H:)
qvqlvqsgaevkkpgasvkvsckasgytftgyymnwvrqapgqglewmgwinpnsggtny
aqkfqgrvtmtrdtsistaymelsrlrsddtavyycargknsdynwdfqhwgqgtlvtvs
sastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdk

    Sequence, based on observed residues (ATOM records):
    >6p8nH (H:)
qvqlvqsgaevkkpgasvkvsckasgytftgyymnwvrqapgqglewmgwinpnsggtny
aqkfqgrvtmtrdtsistaymelsrlrsddtavyycargknsdynwdfqhwgqgtlvtvs
sastkgpsvfplapssksggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepks

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6p8nL (L:)
divmsqspsslavsvgekvtmsckssqsllyssnqknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltissvkaedlavyycqqyemfgggtkleikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records):
    >6p8nL (L:)
ivmsqspsslavsvgekvtmsckssknylawyqqkpgqspklliywastresgvpdrftg
sgsgtdftltissvkaedlavyycqqyemfgggtkleikrtvaapsvfifppsdeqlksg
tasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlskadyek
hkvyacevthqglsspvtksfnrg