PDB entry 6p62

View 6p62 on RCSB PDB site
Description: hiv env bg505 nfl td+ in complex with antibody e70 fragment antigen binding
Deposited on 2019-05-31, released 2019-11-20
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: EM
Resolution: 3.57 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HIV-1 Env BG505 NFL TD+
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P62
  • Chain 'B':
    Compound: HIV-1 Env BG505 NFL TD+
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P62
  • Chain 'C':
    Compound: Rabbit monoclonal antibody E70 heavy chain fragment antigen binding
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P62 (0-End)
  • Chain 'D':
    Compound: Rabbit monoclonal antibody E70 kappa chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P62 (0-End)
  • Chain 'E':
    Compound: HIV-1 Env BG505 NFL TD+
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P62
  • Chain 'F':
    Compound: Rabbit monoclonal antibody E70 heavy chain fragment antigen binding
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P62 (0-End)
  • Chain 'G':
    Compound: Rabbit monoclonal antibody E70 kappa chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P62 (0-End)
  • Chain 'H':
    Compound: Rabbit monoclonal antibody E70 heavy chain fragment antigen binding
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P62 (0-End)
  • Chain 'L':
    Compound: Rabbit monoclonal antibody E70 kappa chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6P62 (0-End)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6p62A (A:)
mpmgslqplatlyllgmlvasvlaaenlwvtvyygvpvwkdaettlfcasdakayetekh
nvwathacvptdpnpqeihlenvteefnmwknnmveqmhtdiislwdqslkpcvkltplc
vtlqctnvtnnitddmrgelkncsfnmttelrdkkqkvyslfyrldvvqinenqgnrsnn
snkeyrlincntsactqacpkvsfepipihycapagfailkckdkkfngtgpcpsvstvq
cthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntpvqinctrpnnytrks
irigpgqafyatgdiigdirqahcnvskatwnetlgkvvkqlrkhfgnntiirfanssgg
dlevtthsfncggeffycntsglfnstwisntsvqgsnstgsndsitlpcrikqiinmwq
rigqcmyappiqgvircvsnitgliltrdggstnsttetfrpgggdmrdnwrselykykv
vkieplgvaptrakrrvvgggggsggggsavgigavrrgflgaagstmgaasmtltvqar
nllsgivqqqsnllrapeaqqhllkltvwgikqlqarvlaverylrdqqllgiwgcsgkl
icttnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiyglleesqnqqekneqdlla
ldggggshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6p62A (A:)
vtvyygvpvwkdaettlfcashnvwathacvptdpnpqeihlenvteefnmwknnmveqm
htdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncsfnmttelrdkkqkv
yslfyrldvvqinnkeyrlincntsactqacpkvsfepipihycapagfailkckdkkfn
gtgpcpsvstvqcthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntpvqi
nctrpnnytrksirigpgqafyatgdiigdirqahcnvskatwnetlgkvvkqlrkhfgn
ntiirfanssggdlevtthsfncggeffycntsglfnstwisnndsitlpcrikqiinmw
qrigqcmyappiqgvircvsnitgliltrdggstnsttetfrpgggdmrdnwrselykyk
vvkieplgvaptrargflgaagstmgaasmtltvqarnllsltvwgikqlqarvlavery
lrdqqllgiwgcsgklicttnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiygll
eesqnqqekne

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6p62B (B:)
mpmgslqplatlyllgmlvasvlaaenlwvtvyygvpvwkdaettlfcasdakayetekh
nvwathacvptdpnpqeihlenvteefnmwknnmveqmhtdiislwdqslkpcvkltplc
vtlqctnvtnnitddmrgelkncsfnmttelrdkkqkvyslfyrldvvqinenqgnrsnn
snkeyrlincntsactqacpkvsfepipihycapagfailkckdkkfngtgpcpsvstvq
cthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntpvqinctrpnnytrks
irigpgqafyatgdiigdirqahcnvskatwnetlgkvvkqlrkhfgnntiirfanssgg
dlevtthsfncggeffycntsglfnstwisntsvqgsnstgsndsitlpcrikqiinmwq
rigqcmyappiqgvircvsnitgliltrdggstnsttetfrpgggdmrdnwrselykykv
vkieplgvaptrakrrvvgggggsggggsavgigavrrgflgaagstmgaasmtltvqar
nllsgivqqqsnllrapeaqqhllkltvwgikqlqarvlaverylrdqqllgiwgcsgkl
icttnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiyglleesqnqqekneqdlla
ldggggshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6p62B (B:)
vtvyygvpvwkdaettlfcashnvwathacvptdpnpqeihlenvteefnmwknnmveqm
htdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncsfnmttelrdkkqkv
yslfyrldvvqinnkeyrlincntsactqacpkvsfepipihycapagfailkckdkkfn
gtgpcpsvstvqcthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntpvqi
nctrpnnytrksirigpgqafyatgdiigdirqahcnvskatwnetlgkvvkqlrkhfgn
ntiirfanssggdlevtthsfncggeffycntsglfnstwisnndsitlpcrikqiinmw
qrigqcmyappiqgvircvsnitgliltrdggstnsttetfrpgggdmrdnwrselykyk
vvkieplgvaptrargflgaagstmgaasmtltvqarnllsltvwgikqlqarvlavery
lrdqqllgiwgcsgklicttnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiygll
eesqnqqekne

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6p62C (C:)
qsleesggglvkpggtltltckasgidftsgydmcwvrqapgkglewvaciylgdgntyy
aswakgqftisktssttvtlqmtsltaadtatyfcarfagyrysvwsypdlwgpgtlvtv
ssgqpkapsvfplapccgdtpsstvtlgclvkgylpepvtvtwnsgtltngvrtfpsvrq
ssglyslssvvsvtsssqpvtcnvahpatntkvdktvapstcsk

    Sequence, based on observed residues (ATOM records):
    >6p62C (C:)
qsleesggglvkpggtltltckasgidftsgydmcwvrqapgkglewvaciylgdgntyy
aswakgqftisktssttvtlqmtsltaadtatyfcarfagyrysvwsypdlwgpgtlvt

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6p62D (D:)
divmtqtpasveadvggtvtikcqasqrivnlvawyqhkpgqppklliigasdlasgvps
rfsgsgygteftltisdlecadaatyfcqsayngdgdnafgggtevvvkgdpvapsvlif
ppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynlsstl
tltstqynshkeytckvtqgttsvvqsfnrgdc

    Sequence, based on observed residues (ATOM records):
    >6p62D (D:)
divmtqtpasveadvggtvtikcqasqrivnlvawyqhkpgqppklliigasdlasgvps
rfsgsgygteftltisdlecadaatyfcqsayngdgdnafgggtevvv

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6p62E (E:)
mpmgslqplatlyllgmlvasvlaaenlwvtvyygvpvwkdaettlfcasdakayetekh
nvwathacvptdpnpqeihlenvteefnmwknnmveqmhtdiislwdqslkpcvkltplc
vtlqctnvtnnitddmrgelkncsfnmttelrdkkqkvyslfyrldvvqinenqgnrsnn
snkeyrlincntsactqacpkvsfepipihycapagfailkckdkkfngtgpcpsvstvq
cthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntpvqinctrpnnytrks
irigpgqafyatgdiigdirqahcnvskatwnetlgkvvkqlrkhfgnntiirfanssgg
dlevtthsfncggeffycntsglfnstwisntsvqgsnstgsndsitlpcrikqiinmwq
rigqcmyappiqgvircvsnitgliltrdggstnsttetfrpgggdmrdnwrselykykv
vkieplgvaptrakrrvvgggggsggggsavgigavrrgflgaagstmgaasmtltvqar
nllsgivqqqsnllrapeaqqhllkltvwgikqlqarvlaverylrdqqllgiwgcsgkl
icttnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiyglleesqnqqekneqdlla
ldggggshhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6p62E (E:)
vtvyygvpvwkdaettlfcashnvwathacvptdpnpqeihlenvteefnmwknnmveqm
htdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncsfnmttelrdkkqkv
yslfyrldvvqinnkeyrlincntsactqacpkvsfepipihycapagfailkckdkkfn
gtgpcpsvstvqcthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntpvqi
nctrpnnytrksirigpgqafyatgdiigdirqahcnvskatwnetlgkvvkqlrkhfgn
ntiirfanssggdlevtthsfncggeffycntsglfnstwisnndsitlpcrikqiinmw
qrigqcmyappiqgvircvsnitgliltrdggstnsttetfrpgggdmrdnwrselykyk
vvkieplgvaptrargflgaagstmgaasmtltvqarnllsltvwgikqlqarvlavery
lrdqqllgiwgcsgklicttnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiygll
eesqnqqekne

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6p62F (F:)
qsleesggglvkpggtltltckasgidftsgydmcwvrqapgkglewvaciylgdgntyy
aswakgqftisktssttvtlqmtsltaadtatyfcarfagyrysvwsypdlwgpgtlvtv
ssgqpkapsvfplapccgdtpsstvtlgclvkgylpepvtvtwnsgtltngvrtfpsvrq
ssglyslssvvsvtsssqpvtcnvahpatntkvdktvapstcsk

    Sequence, based on observed residues (ATOM records):
    >6p62F (F:)
qsleesggglvkpggtltltckasgidftsgydmcwvrqapgkglewvaciylgdgntyy
aswakgqftisktssttvtlqmtsltaadtatyfcarfagyrysvwsypdlwgpgtlvt

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6p62G (G:)
divmtqtpasveadvggtvtikcqasqrivnlvawyqhkpgqppklliigasdlasgvps
rfsgsgygteftltisdlecadaatyfcqsayngdgdnafgggtevvvkgdpvapsvlif
ppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynlsstl
tltstqynshkeytckvtqgttsvvqsfnrgdc

    Sequence, based on observed residues (ATOM records):
    >6p62G (G:)
divmtqtpasveadvggtvtikcqasqrivnlvawyqhkpgqppklliigasdlasgvps
rfsgsgygteftltisdlecadaatyfcqsayngdgdnafgggtevvv

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6p62H (H:)
qsleesggglvkpggtltltckasgidftsgydmcwvrqapgkglewvaciylgdgntyy
aswakgqftisktssttvtlqmtsltaadtatyfcarfagyrysvwsypdlwgpgtlvtv
ssgqpkapsvfplapccgdtpsstvtlgclvkgylpepvtvtwnsgtltngvrtfpsvrq
ssglyslssvvsvtsssqpvtcnvahpatntkvdktvapstcsk

    Sequence, based on observed residues (ATOM records):
    >6p62H (H:)
qsleesggglvkpggtltltckasgidftsgydmcwvrqapgkglewvaciylgdgntyy
aswakgqftisktssttvtlqmtsltaadtatyfcarfagyrysvwsypdlwgpgtlvt

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6p62L (L:)
divmtqtpasveadvggtvtikcqasqrivnlvawyqhkpgqppklliigasdlasgvps
rfsgsgygteftltisdlecadaatyfcqsayngdgdnafgggtevvvkgdpvapsvlif
ppaadqvatgtvtivcvankyfpdvtvtwevdgttqttgiensktpqnsadctynlsstl
tltstqynshkeytckvtqgttsvvqsfnrgdc

    Sequence, based on observed residues (ATOM records):
    >6p62L (L:)
divmtqtpasveadvggtvtikcqasqrivnlvawyqhkpgqppklliigasdlasgvps
rfsgsgygteftltisdlecadaatyfcqsayngdgdnafgggtevvv