PDB entry 6p59

View 6p59 on RCSB PDB site
Description: Crystal structure of SIVrcm Vif-CBFbeta-ELOB-ELOC complex
Class: viral protein/immune system
Keywords: Complex, Vif, A3G, VIRAL PROTEIN, viral protein-immune system complex
Deposited on 2019-05-29, released 2019-12-25
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 2.94 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Core-binding factor subunit beta
    Species: Homo sapiens [TaxId:9606]
    Gene: CBFB
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Virion infectivity factor
    Species: Simian immunodeficiency virus [TaxId:11723]
    Gene: vif
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Core-binding factor subunit beta
    Species: Homo sapiens [TaxId:9606]
    Gene: CBFB
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Elongin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: ELOB, TCEB2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6p59d_
  • Chain 'E':
    Compound: Elongin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: ELOC, TCEB1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6p59e_
  • Chain 'F':
    Compound: Virion infectivity factor
    Species: Simian immunodeficiency virus [TaxId:11723]
    Gene: vif
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: Elongin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: ELOB, TCEB2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6p59w_
  • Chain 'Z':
    Compound: Elongin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: ELOC, TCEB1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6p59z_
  • Heterogens: ZN, GOL, MES, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6p59D (D:)
mdvflmirrhkttiftdakesstvfelkrivegilkrppdeqrlykddqllddgktlgec
gftsqtarpqapatvglafraddtfealciepfssppelpdvmkpqdsgssaneqavq

    Sequence, based on observed residues (ATOM records): (download) 
    >6p59D (D:)
mdvflmirrhkttiftdakesstvfelkrivegilkrppdeqrlykddqllddgktlgec
gftsqtarpqapatvglafraddtfealciepfssppe

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6p59E (E:)
mdgeektyggcegpdamyvklissdghefivkrehaltsgtikamlsgpgqfaenetnev
nfreipshvlskvcmyftykvrytnssteipefpiapeialellmaanfldc

    Sequence, based on observed residues (ATOM records): (download) 
    >6p59E (E:)
myvklissdghefivkrehaltsgtikamlsgpgqfaenetnevnfreipshvlskvcmy
ftykvrytnssteipefpiapeialellmaanfldc

  • Chain 'F':
    No sequence available.

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >6p59W (W:)
mdvflmirrhkttiftdakesstvfelkrivegilkrppdeqrlykddqllddgktlgec
gftsqtarpqapatvglafraddtfealciepfssppelpdvmkpqdsgssaneqavq

    Sequence, based on observed residues (ATOM records): (download) 
    >6p59W (W:)
mdvflmirrhkttiftdakesstvfelkrivegilkrppdeqrlykddqllddgktlgec
gftsqtarpqapatvglafraddtfealciepfssppe

  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >6p59Z (Z:)
mdgeektyggcegpdamyvklissdghefivkrehaltsgtikamlsgpgqfaenetnev
nfreipshvlskvcmyftykvrytnssteipefpiapeialellmaanfldc

    Sequence, based on observed residues (ATOM records): (download) 
    >6p59Z (Z:)
myvklissdghefivkrehaltsgtikamlsgpgqfaenetnevnfreipshvlskvcmy
ftykvrytnssteipefpiapeialellmaanfldc