PDB entry 6p53

View 6p53 on RCSB PDB site
Description: Crystal structure of the transpeptidase domain of PBP2 from Neisseria gonorrhoeae in apo form
Class: hydrolase
Keywords: Penicillin-binding protein, transpeptidase domain, N. gonorrhoeae, antibiotic resistance, HYDROLASE
Deposited on 2019-05-29, released 2019-08-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: peptidoglycan D,D-transpeptidase PenA
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: penA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08149 (5-End)
      • expression tag (4)
      • conflict (51)
    Domains in SCOPe 2.08: d6p53a1, d6p53a2
  • Chain 'B':
    Compound: peptidoglycan D,D-transpeptidase PenA
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: penA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08149 (5-328)
      • expression tag (4)
      • conflict (51)
    Domains in SCOPe 2.08: d6p53b1, d6p53b2
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6p53A (A:)
gsggalsldqriqtlayeelnkaveyhqakagtvvvldartgeilalantpgrnravtdm
iepgsaikpfviakaldagktdlnerlntqpykigpspvrdthvypsldvrgimqkssnv
gtsklsarfgaeemydfyhelgigvrmhsgfpgetagllrnwrrwrpieqatmsfgyglq
lsllqlaraytalthdgvllplsfekqavapqgkrifkestarevrnlmvsvtepggtgt
agavdgfdvgaktgtarkfvngryadnkhvatfigfapaknprvivavtideptahgyyg
gvvagppfkkimggslnilgisptkplta

    Sequence, based on observed residues (ATOM records): (download) 
    >6p53A (A:)
alsldqriqtlayeelnkaveyhqakagtvvvldartgeilalantpgrnravtdmiepg
saikpfviakaldagktdlnerlntqpykigpspvrdthvypsldvrgimqkssnvgtsk
lsarfgaeemydfyhelgigvrmhsgfpgetagllrnwrrwrpieqatmsfgyglqlsll
qlaraytalthdgvllplsfekqavapqgkrifkestarevrnlmvsvtepggtgtagav
dgfdvgaktgtarkkhvatfigfapaknprvivavtideptahgyyggvvagppfkkimg
gslnilgisptkplt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6p53B (B:)
gsggalsldqriqtlayeelnkaveyhqakagtvvvldartgeilalantpgrnravtdm
iepgsaikpfviakaldagktdlnerlntqpykigpspvrdthvypsldvrgimqkssnv
gtsklsarfgaeemydfyhelgigvrmhsgfpgetagllrnwrrwrpieqatmsfgyglq
lsllqlaraytalthdgvllplsfekqavapqgkrifkestarevrnlmvsvtepggtgt
agavdgfdvgaktgtarkfvngryadnkhvatfigfapaknprvivavtideptahgyyg
gvvagppfkkimggslnilgisptkplta

    Sequence, based on observed residues (ATOM records): (download) 
    >6p53B (B:)
alsldqriqtlayeelnkaveyhqakagtvvvldartgeilalantpgrnravtdmiepg
saikpfviakaldagktdlnerlntqpykigpspvrdthvypsldvrgimqkssnvgtsk
lsarfgaeemydfyhelgigvrmhsgfpgetagllrnwrrwrpieqatmsfgyglqlsll
qlaraytalthdgvllplsfekqavapqgkrifkestarevrnlmvsvtepggtgtagav
dgfdvgaktgtarkfvngryadnkhvatfigfapaknprvivavtideptahgyyggvva
gppfkkimggslnilgisptkplta