PDB entry 6p4t

View 6p4t on RCSB PDB site
Description: salmonella typhi pltb homopentamer t65i mutant with neu5ac-alpha-2-3- gal-beta-1-4-glcnac glycans
Deposited on 2019-05-28, released 2020-03-25
The last revision was dated 2020-08-05, with a file datestamp of 2020-07-31.
Experiment type: XRAY
Resolution: 2.17 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative pertussis-like toxin subunit
    Species: Salmonella enterica subsp. enterica serovar Typhi str. CT18 [TaxId:220341]
    Gene: STY1891, t1107
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8Z6A3 (Start-136)
      • engineered mutation (64)
  • Chain 'B':
    Compound: Putative pertussis-like toxin subunit
    Species: Salmonella enterica subsp. enterica serovar Typhi str. CT18 [TaxId:220341]
    Gene: STY1891, t1107
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8Z6A3 (Start-136)
      • engineered mutation (64)
      • expression tag (137)
  • Chain 'C':
    Compound: Putative pertussis-like toxin subunit
    Species: Salmonella enterica subsp. enterica serovar Typhi str. CT18 [TaxId:220341]
    Gene: STY1891, t1107
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8Z6A3 (Start-136)
      • engineered mutation (64)
  • Chain 'D':
    Compound: Putative pertussis-like toxin subunit
    Species: Salmonella enterica subsp. enterica serovar Typhi str. CT18 [TaxId:220341]
    Gene: STY1891, t1107
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8Z6A3 (Start-136)
      • engineered mutation (64)
  • Chain 'E':
    Compound: Putative pertussis-like toxin subunit
    Species: Salmonella enterica subsp. enterica serovar Typhi str. CT18 [TaxId:220341]
    Gene: STY1891, t1107
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8Z6A3 (Start-136)
      • engineered mutation (64)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6p4tA (A:)
mymskyvpvytlliliysfnasaewtgdntnayysdeviselhvgqidtspyfciktvka
ngsgipvvacavskqsiwapsfkelldqaryfystgqsvrihvqkniwtyplfvntfsan
alvglsscsatqcfgpklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6p4tA (A:)
ewtgdntnayysdeviselhvgqidtspyfciktvkangsgipvvacavskqsiwapsfk
elldqaryfystgqsvrihvqkniwtyplfvntfsanalvglsscsatqcfgpk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6p4tB (B:)
mymskyvpvytlliliysfnasaewtgdntnayysdeviselhvgqidtspyfciktvka
ngsgipvvacavskqsiwapsfkelldqaryfystgqsvrihvqkniwtyplfvntfsan
alvglsscsatqcfgpklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6p4tB (B:)
ewtgdntnayysdeviselhvgqidtspyfciktvkangsgipvvacavskqsiwapsfk
elldqaryfystgqsvrihvqkniwtyplfvntfsanalvglsscsatqcfgpkl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6p4tC (C:)
mymskyvpvytlliliysfnasaewtgdntnayysdeviselhvgqidtspyfciktvka
ngsgipvvacavskqsiwapsfkelldqaryfystgqsvrihvqkniwtyplfvntfsan
alvglsscsatqcfgpklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6p4tC (C:)
ewtgdntnayysdeviselhvgqidtspyfciktvkangsgipvvacavskqsiwapsfk
elldqaryfystgqsvrihvqkniwtyplfvntfsanalvglsscsatqcfgpk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6p4tD (D:)
mymskyvpvytlliliysfnasaewtgdntnayysdeviselhvgqidtspyfciktvka
ngsgipvvacavskqsiwapsfkelldqaryfystgqsvrihvqkniwtyplfvntfsan
alvglsscsatqcfgpklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6p4tD (D:)
ewtgdntnayysdeviselhvgqidtspyfciktvkangsgipvvacavskqsiwapsfk
elldqaryfystgqsvrihvqkniwtyplfvntfsanalvglsscsatqcfgpk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6p4tE (E:)
mymskyvpvytlliliysfnasaewtgdntnayysdeviselhvgqidtspyfciktvka
ngsgipvvacavskqsiwapsfkelldqaryfystgqsvrihvqkniwtyplfvntfsan
alvglsscsatqcfgpklehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6p4tE (E:)
ewtgdntnayysdeviselhvgqidtspyfciktvkangsgipvvacavskqsiwapsfk
elldqaryfystgqsvrihvqkniwtyplfvntfsanalvglsscsatqcfgpk