PDB entry 6p4o

View 6p4o on RCSB PDB site
Description: complex of xpb helicase with bax1 endonuclease from sulfurisphaera tokodaii at 3.15 angstroms resolution
Deposited on 2019-05-28, released 2020-06-03
The last revision was dated 2020-06-03, with a file datestamp of 2020-05-29.
Experiment type: XRAY
Resolution: 3.15 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-dependent ATPase XPBII
    Species: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) [TaxId:273063]
    Gene: xpb2, ST1613, STK_16130
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q970I2 (20-458)
      • expression tag (17-19)
  • Chain 'B':
    Compound: Endonuclease Bax1
    Species: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) [TaxId:273063]
    Gene: bax1, ST1614, STK_16140
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA-dependent ATPase XPBII
    Species: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) [TaxId:273063]
    Gene: xpb2, ST1613, STK_16130
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q970I2 (20-End)
      • expression tag (15-19)
  • Chain 'D':
    Compound: Endonuclease Bax1
    Species: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) [TaxId:273063]
    Gene: bax1, ST1614, STK_16140
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA-dependent ATPase XPBII
    Species: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) [TaxId:273063]
    Gene: xpb2, ST1613, STK_16130
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q970I2 (20-End)
      • expression tag (18-19)
  • Chain 'F':
    Compound: Endonuclease Bax1
    Species: Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) [TaxId:273063]
    Gene: bax1, ST1614, STK_16140
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, CL, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6p4oA (A:)
mgsshhhhhhssglvprgshmvylryfkglilsdayapglkwsdelkaysalafkyrdvr
kyflekeieveenvidslpfplikdkielrdyqaeavkawlkekrgiivlptgagktqva
lkivsimkvatlivvptidlitqwkerinkyldfdpgiigggedslkgitvitydsaytr
aeelgnkfpllifdevhhlpsegysimaqlfaspyrlgltatperddgkhelypilvgpi
vyrksveelagkyiakykikklyvsltneekkrydglrkklkdflssrglklqnlddfhr
lvklaakdkeareallawheslniavnsqskieklreilqeyknekiivftrdtqmayri
sktflipvvtyktdkdereeilqkfrdgeyrvivastvfdegvdvpdatlaivmggygtk
rqflqrlgrilrkkdkeallieivtkgtadyrlsrrrre

    Sequence, based on observed residues (ATOM records):
    >6p4oA (A:)
gshmvylryfkglilsdayapglkwsdelkaysalafkyrdvrkyflekeieveenvids
lpfplikdkielrdyqaeavkawlkekrgiivlptgagktqvalkivsimkvatlivvpt
idlitqwkerinkyldfdpgiigggedslkgitvitydsaytraeelgnkfpllifdevh
hlpsegysimaqlfaspyrlgltatperddgkhelypilvgpivyrksveelagkyiaky
kikklyvsltneekkrydglrkklkdflssrglklqnlddfhrlvklaakdkearealla
wheslniavnsqskieklreilqeyknekiivftrdtqmayrisktflipvvtyktdkde
reeilqkfrdgeyrvivastvfdegvdvpdatlaivmggygtkrqflqrlgrilrkkdke
allieivtkgtadyrlsrrrre

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6p4oB (B:)
mgsshhhhhhssglvprgshmlpwelarfsivkdevlphfatnedldlaneiislfkagk
klgeideeieylekiydhklvrafvklltrlcefeldspippiqirrelfkygpvldeke
rediiqkvskklgadimrfvfsdldeekkiikaptisaedlirwynlsllqtllfkaykl
tvyvssnwkeiirrakwlglmyfaydkplrfeflgpatlvkltekygrnlavllqfiiss
qnwkieaelvlgkkfkrvyklklanfkelkelvidekrfdssveekfykdftnvikgwki
irepeplvvdnrvfipdflvekgnlkvyveivgfwtkeyikekldklkkvkypilillne
elgkekfngmnvitykrkidislvykwlrelenkylnevkvdytisgdiislneiaskls
lpvevirknikifpgyiflknyyvsekfleklrnenfdnkslkelvsaygdyivevlefl
gyklkwqgisdaivikdkkvn

    Sequence, based on observed residues (ATOM records):
    >6p4oB (B:)
mlpwelarfsivkdevlphfatnedldlaneiislfkagkklgeideeieylekiydhkl
vrafvklltrlcefeldspippiqirrelfkygpvldekerediiqkvskklgadimrfv
fsdldeekkiikaptisaedlirwynlsllqtllfkaykltvyvssnwkeiirrakwlgl
myfaydkplrfeflgpatlvkltekygrnlavllqfiissqnwkieaelvlgkkfkrvyk
lklanfkelkelvidekrfdssveekfykdftnvikgwkiirepeplvvdnrvfipdflv
ekgnlkvyveivgfwtkeyikekldklkkvkypilillneelgkekfngmnvitykrkid
islvykwlrelenkylnevkvdytisgdiislneiasklslpvevirknikifpgyiflk
nyyvsekfleklrnenfdnkslkelvsaygdyivevleflgyklkwqgisdaivikdkk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6p4oC (C:)
mgsshhhhhhssglvprgshmvylryfkglilsdayapglkwsdelkaysalafkyrdvr
kyflekeieveenvidslpfplikdkielrdyqaeavkawlkekrgiivlptgagktqva
lkivsimkvatlivvptidlitqwkerinkyldfdpgiigggedslkgitvitydsaytr
aeelgnkfpllifdevhhlpsegysimaqlfaspyrlgltatperddgkhelypilvgpi
vyrksveelagkyiakykikklyvsltneekkrydglrkklkdflssrglklqnlddfhr
lvklaakdkeareallawheslniavnsqskieklreilqeyknekiivftrdtqmayri
sktflipvvtyktdkdereeilqkfrdgeyrvivastvfdegvdvpdatlaivmggygtk
rqflqrlgrilrkkdkeallieivtkgtadyrlsrrrre

    Sequence, based on observed residues (ATOM records):
    >6p4oC (C:)
prgshmvylryfkglilsdayapglkwsdelkaysalafkyrdvrkyflekeieveenvi
dslpfplikdkielrdyqaeavkawlkekrgiivlptgagktqvalkivsimkvatlivv
ptidlitqwkerinkyldfdpgiigggedslkgitvitydsaytraeelgnkfpllifde
vhhlpsegysimaqlfaspyrlgltatperddgkhelypilvgpivyrksveelagkyia
kykikklyvsltneekkrydglrkklkdflssrglklqnlddfhrlvklaakdkeareal
lawheslniavnsqskieklreilqeyknekiivftrdtqmayrisktflipvvtyktdk
dereeilqkfrdgeyrvivastvfdegvdvpdatlaivmggygtkrqflqrlgrilrkkd
keallieivtkgtadyr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6p4oD (D:)
mgsshhhhhhssglvprgshmlpwelarfsivkdevlphfatnedldlaneiislfkagk
klgeideeieylekiydhklvrafvklltrlcefeldspippiqirrelfkygpvldeke
rediiqkvskklgadimrfvfsdldeekkiikaptisaedlirwynlsllqtllfkaykl
tvyvssnwkeiirrakwlglmyfaydkplrfeflgpatlvkltekygrnlavllqfiiss
qnwkieaelvlgkkfkrvyklklanfkelkelvidekrfdssveekfykdftnvikgwki
irepeplvvdnrvfipdflvekgnlkvyveivgfwtkeyikekldklkkvkypilillne
elgkekfngmnvitykrkidislvykwlrelenkylnevkvdytisgdiislneiaskls
lpvevirknikifpgyiflknyyvsekfleklrnenfdnkslkelvsaygdyivevlefl
gyklkwqgisdaivikdkkvn

    Sequence, based on observed residues (ATOM records):
    >6p4oD (D:)
mlpwelarfsivkdevlphfatnedldlaneiislfkagkklgeideeieylekiydhkl
vrafvklltrlcefeldspippiqirrelfkygpvldekerediiqkvskklgadimrfv
fsdldeekkiikaptisaedlirwynlsllqtllfkaykltvyvssnwkeiirrakwlgl
myfaydkplrfeflgpatlvkltekygrnlavllqfiissqnwkieaelvlgkkfkrvyk
lklanfkelkelvidekrfdssveekfykdftnvikgwkiirepeplvvdnrvfipdflv
ekgnlkvyveivgfwtkeyikekldklkkvkypilillneelgkekfngmnvitykrkid
islvykwlrelenkylnevkvdytisgdiislneiasklslpvevirknikifpgyiflk
nyyvsekfleklrnenfdnkslkelvsaygdyivevleflgyklkwqgisdaivikd

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6p4oE (E:)
mgsshhhhhhssglvprgshmvylryfkglilsdayapglkwsdelkaysalafkyrdvr
kyflekeieveenvidslpfplikdkielrdyqaeavkawlkekrgiivlptgagktqva
lkivsimkvatlivvptidlitqwkerinkyldfdpgiigggedslkgitvitydsaytr
aeelgnkfpllifdevhhlpsegysimaqlfaspyrlgltatperddgkhelypilvgpi
vyrksveelagkyiakykikklyvsltneekkrydglrkklkdflssrglklqnlddfhr
lvklaakdkeareallawheslniavnsqskieklreilqeyknekiivftrdtqmayri
sktflipvvtyktdkdereeilqkfrdgeyrvivastvfdegvdvpdatlaivmggygtk
rqflqrlgrilrkkdkeallieivtkgtadyrlsrrrre

    Sequence, based on observed residues (ATOM records):
    >6p4oE (E:)
shmvylryfkglilsdayapglkwsdelkaysalafkyrdvrkyflekeieveenvidsl
pfplikdkielrdyqaeavkawlkekrgiivlptgagktqvalkivsimkvatlivvpti
dlitqwkerinkyldfdpgiigggedslkgitvitydsaytraeelgnkfpllifdevhh
lpsegysimaqlfaspyrlgltatperddgkhelypilvgpivyrksveelagkyiakyk
ikklyvsltneekkrydglrkklkdflssrglklqnlddfhrlvklaakdkeareallaw
heslniavnsqskieklreilqeyknekiivftrdtqmayrisktflipvvtyktdkder
eeilqkfrdgeyrvivastvfdegvdvpdatlaivmggygtkrqflqrlgrilrkkdkea
llieivtkgtadyrlsr

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6p4oF (F:)
mgsshhhhhhssglvprgshmlpwelarfsivkdevlphfatnedldlaneiislfkagk
klgeideeieylekiydhklvrafvklltrlcefeldspippiqirrelfkygpvldeke
rediiqkvskklgadimrfvfsdldeekkiikaptisaedlirwynlsllqtllfkaykl
tvyvssnwkeiirrakwlglmyfaydkplrfeflgpatlvkltekygrnlavllqfiiss
qnwkieaelvlgkkfkrvyklklanfkelkelvidekrfdssveekfykdftnvikgwki
irepeplvvdnrvfipdflvekgnlkvyveivgfwtkeyikekldklkkvkypilillne
elgkekfngmnvitykrkidislvykwlrelenkylnevkvdytisgdiislneiaskls
lpvevirknikifpgyiflknyyvsekfleklrnenfdnkslkelvsaygdyivevlefl
gyklkwqgisdaivikdkkvn

    Sequence, based on observed residues (ATOM records):
    >6p4oF (F:)
mlpwelarfsivkdevlphfatnedldlaneiislfkagkklgeideeieylekiydhkl
vrafvklltrlcefeldspippiqirrelfkygpvldekerediiqkvskklgadimrfv
fsdldeekkiikaptisaedlirwynlsllqtllfkaykltvyvssnwkeiirrakwlgl
myfaydkplrfeflgpatlvkltekygrnlavllqfiissqnwkieaelvlgkkfkrvyk
lklanfkelkelvidekrfdssveekfykdftnvikgwkiirepeplvvdnrvfipdflv
ekgnlkvyveivgfwtkeyikekldklkkvkypilillneelgkekfngmnvitykrkid
islvykwlrelenkylnevkvdytisgdiislneiasklslpvevirknikifpgyiflk
nyyvsekfleklrnenfdnkslkelvsaygdyivevleflgyklkwqgisdaivikdkkv
n