PDB entry 6ozj

View 6ozj on RCSB PDB site
Description: crystal structure of mus musculus (mm) endonuclease v in complex with a 23mer rna oligo containing an inosine in the absence of divalent cation
Deposited on 2019-05-15, released 2019-09-04
The last revision was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: endonuclease v
    Species: Mus musculus [TaxId:10090]
    Gene: ENDOV
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: endonuclease v
    Species: Mus musculus [TaxId:10090]
    Gene: ENDOV
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA/RNA (5'-r(p*cp*gp*gp*up*ap*ap*cp*cp*c)-d(p*I)-r(p*ap*up*ap*up*gp*cp*ap*up*gp*cp*ap*up*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA/RNA (5'-r(p*cp*gp*gp*up*ap*ap*cp*cp*c)-d(p*I)-r(p*ap*up*ap*up*gp*cp*ap*up*gp*cp*ap*up*u)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: GOL, EDO, PGE, K, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ozjA (A:)
mahtaaerppeetlslwkgeqarlkarvvdrdteawqrdpsfsglqkvggvdvsfvkgds
vracaslvvlsypelkvvyedsrmvglkapyvsgflafrevpflvelvqrlqekepdlmp
qvvlvdgngvlhqrgfgvachlgvltelpcigvakkllqvdglennalhkekivllqagg
dtfpligssgtvlgmalrshdhstkplyvsvghrislevavrlthhccrfripepirqad
irsreyirrtlgq

    Sequence, based on observed residues (ATOM records):
    >6ozjA (A:)
erppeetlslwkgeqarlkarvvdrdteawqrdpsfsglqkvggvdvsfvksvracaslv
vlsypelkvvyedsrmvglkapyvsgflafrevpflvelvqrlqekepdlmpqvvlvdgn
gvlhqrgfgvachlgvltelpcigvakkllqvdglennalhkekivllqaggdtfpligs
sgtvlgmalrshdhstkplyvsvghrislevavrlthhccrfripepirqadirsreyir
rt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ozjB (B:)
mahtaaerppeetlslwkgeqarlkarvvdrdteawqrdpsfsglqkvggvdvsfvkgds
vracaslvvlsypelkvvyedsrmvglkapyvsgflafrevpflvelvqrlqekepdlmp
qvvlvdgngvlhqrgfgvachlgvltelpcigvakkllqvdglennalhkekivllqagg
dtfpligssgtvlgmalrshdhstkplyvsvghrislevavrlthhccrfripepirqad
irsreyirrtlgq

    Sequence, based on observed residues (ATOM records):
    >6ozjB (B:)
taaerppeetlslwkgeqarlkarvvdrdteawqrdpsfsglqkvggvdvsfvkgdsvra
caslvvlsypelkvvyedsrmvglkapyvsgflafrevpflvelvqrlqekepdlmpqvv
lvdgngvlhqrgfgvachlgvltelpcigvakkllqvdglennalhkekivllqaggdtf
pligssgtvlgmalrshdhstkplyvsvghrislevavrlthhccrfripepirqadirs
reyirrtlgq

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.