PDB entry 6ozh

View 6ozh on RCSB PDB site
Description: crystal structure of ciona intestinalis (ci) endonuclease v in complex with a 24mer dna containing an inosine followed by a ribo-adenosine
Deposited on 2019-05-15, released 2019-09-04
The last revision was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 3.03 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: endonuclease V isoform X2
    Species: Ciona intestinalis [TaxId:7719]
    Gene: LOC100181026
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: endonuclease V isoform X2
    Species: Ciona intestinalis [TaxId:7719]
    Gene: LOC100181026
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: endonuclease V isoform X2
    Species: Ciona intestinalis [TaxId:7719]
    Gene: LOC100181026
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: endonuclease V isoform X2
    Species: Ciona intestinalis [TaxId:7719]
    Gene: LOC100181026
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA/RNA (5'-d(p*cp*gp*gp*tp*ap*ap*cp*cp*gp*I)-r(p*a)-d(p*tp*ap*tp*gp*cp*ap*gp*cp*ap*tp*tp*tp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA/RNA (5'-d(p*cp*gp*gp*tp*ap*ap*cp*cp*gp*I)-r(p*a)-d(p*tp*ap*tp*gp*cp*ap*gp*cp*ap*tp*tp*tp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: DNA/RNA (5'-d(p*cp*gp*gp*tp*ap*ap*cp*cp*gp*I)-r(p*a)-d(p*tp*ap*tp*gp*cp*ap*gp*cp*ap*tp*tp*tp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: DNA/RNA (5'-d(p*cp*gp*gp*tp*ap*ap*cp*cp*gp*I)-r(p*a)-d(p*tp*ap*tp*gp*cp*ap*gp*cp*ap*tp*tp*tp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: CA

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ozhA (A:)
mdnkitdeqiaewnskqeelrdkiirsdgdfslskvkyvggfdvsyskinhelavscmvv
lsypemkqvymnttkvklscpykssylafreiepfqqelqllkakkpnlepqvflldgng
ffhirrcgaashlgvlsntrtigvakslieipedgvkktevisqfkrlrktggneldiis
teknevlakavlyapkvekpifvsaghkcsletaakivkgctktripepikmadkwsrke
lkkie

    Sequence, based on observed residues (ATOM records):
    >6ozhA (A:)
itdeqiaewnskqeelrdkiirsdgdfslskvkyvggfdvsyskinhelavscmvvlsyp
emkqvymnttkvklscpykssylafreiepfqqelqllkakkpnlepqvflldgngffhi
rrcgaashlgvlsntrtigvakslieipedgvkktevisqfkrlrktggneldiistekn
evlakavlyapkvekpifvsaghkcsletaakivkgctktripepikmadkwsrkelkki
e

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ozhB (B:)
mdnkitdeqiaewnskqeelrdkiirsdgdfslskvkyvggfdvsyskinhelavscmvv
lsypemkqvymnttkvklscpykssylafreiepfqqelqllkakkpnlepqvflldgng
ffhirrcgaashlgvlsntrtigvakslieipedgvkktevisqfkrlrktggneldiis
teknevlakavlyapkvekpifvsaghkcsletaakivkgctktripepikmadkwsrke
lkkie

    Sequence, based on observed residues (ATOM records):
    >6ozhB (B:)
itdeqiaewnskqeelrdkiirsdgdfslskvkyvggfdvsyskinhelavscmvvlsyp
emkqvymnttkvklscpykssylafreiepfqqelqllkakkpnlepqvflldgngffhi
rrcgaashlgvlsntrtigvakslieipedgvkktevisqfkrlrktggneldiistekn
evlakavlyapkvekpifvsaghkcsletaakivkgctktripepikmadkwsrkelkki
e

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ozhC (C:)
mdnkitdeqiaewnskqeelrdkiirsdgdfslskvkyvggfdvsyskinhelavscmvv
lsypemkqvymnttkvklscpykssylafreiepfqqelqllkakkpnlepqvflldgng
ffhirrcgaashlgvlsntrtigvakslieipedgvkktevisqfkrlrktggneldiis
teknevlakavlyapkvekpifvsaghkcsletaakivkgctktripepikmadkwsrke
lkkie

    Sequence, based on observed residues (ATOM records):
    >6ozhC (C:)
tdeqiaewnskqeelrdkiirsdgdfslskvkyvggfdvsyskinhelavscmvvlsype
mkqvymnttkvklscpykssylafreiepfqqelqllkakkpnlepqvflldgngffhrr
cgaashlgvlsntrtigvakslieipedgvkktevisqfkrlrktggneldiisteknev
lakavlyapkvekpifvsaghkcsletaakivkgctktripepikmadkwsrkelkkie

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ozhD (D:)
mdnkitdeqiaewnskqeelrdkiirsdgdfslskvkyvggfdvsyskinhelavscmvv
lsypemkqvymnttkvklscpykssylafreiepfqqelqllkakkpnlepqvflldgng
ffhirrcgaashlgvlsntrtigvakslieipedgvkktevisqfkrlrktggneldiis
teknevlakavlyapkvekpifvsaghkcsletaakivkgctktripepikmadkwsrke
lkkie

    Sequence, based on observed residues (ATOM records):
    >6ozhD (D:)
deqiaewnskqeelrdkiirsdgdfslskvkyvggfdvsyskinhelavscmvvlsypem
kqvymnttkvklscpykssylafreiepfqqelqllkakkpnlepqvflldgngffhirr
cgaashlgvlsntrtigvakslieipedgvkktevisqfkrlrktggneldiisteknev
lakavlyapkvekpifvsaghkcsletaakivkgctktripepikmadkwsrkelkkie

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.