PDB entry 6oz9

View 6oz9 on RCSB PDB site
Description: ebola virus glycoprotein in complex with ebov-520 fab
Deposited on 2019-05-15, released 2020-03-11
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 3.46 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Small secreted glycoprotein sGP
    Species: Ebola virus [TaxId:1570291]
    Gene: sGP, DF49_53415gpsGP, DF49_53416gpsGP, DF49_53417gpsGP, DF49_53418gpsGP, DF49_53419gpsGP, DF49_53420gpsGP, DF49_53421gpsGP, DF49_53422gpsGP, DF49_53423gpsGP, DF49_53424gpsGP, DF49_53425gpsGP, DF49_53426gpsGP, DH33_45401gpsGP, DH33_45402gpsGP
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Envelope glycoprotein
    Species: Ebola virus [TaxId:1570291]
    Gene: GP, DH33_45401gpGP
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: EBOV-520 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OZ9 (0-End)
  • Chain 'L':
    Compound: EBOV-520 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OZ9 (0-End)
  • Heterogens: GOL

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6oz9A (A:)
rsiplgvihnstlqvsdvdklvcrdklsstnqlrsvglnlegngvatdvpsatkrwgfrs
gvppkvvnyeagewaencynleikkpdgseclpaapdgirgfprcryvhkvsgtgpcagd
fafhkegafflydrlastviyrgttfaegvvaflilpq

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6oz9B (B:)
aivnaqpkcnpnlhywttqdegaaiglawipyfgpaaegiyteglmhnqdglicglrqla
nettqalqlflrattelrtfsilnrkaidfllqrwggtchilgpdcciephdw

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6oz9H (H:)
qvqlqesgpglgkpsetlslsctvsgasirgyfwnwirqppgkglewigyihstgstnyn
pslksrvtisvdtsknqvslnvnsvtaadtavyfcargawnvatvyyyygmdvwgqgtlv
tvssasfkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

    Sequence, based on observed residues (ATOM records):
    >6oz9H (H:)
qvqlqesgpglgkpsetlslsctvsgasirgyfwnwirqppgkglewigyihstgstnyn
pslksrvtisvdtsknqvslnvnsvtaadtavyfcargawnvatvyyyygmdvwgqgtlv
tvssasfkgpsvfplapssksgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6oz9L (L:)
eivltqspgtlslspgeratlscrasqsvsssyfawyqqkpgqaprllisgtstrapgip
drfsgsgsgtdftltisrlepedfavyfcqqygnslytfgqgtkleikrtaaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records):
    >6oz9L (L:)
eivltqspgtlslspgeratlscrasqsvsssyfawyqqkpgqaprllisgtstrapgip
drfsgsgsgtdftltisrlepedfavyfcqqygnslytfgqgtkleikrtaaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrge