PDB entry 6oyy

View 6oyy on RCSB PDB site
Description: crystal structure of mtb aspartate decarboxylase, pyrazinoic acid complex
Deposited on 2019-05-15, released 2020-02-05
The last revision was dated 2020-02-05, with a file datestamp of 2020-01-31.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Aspartate 1-decarboxylase beta chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-23)
• Chain 'B':
  Compound: Aspartate 1-decarboxylase alpha chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-End)
    • conflict (0)
• Chain 'C':
  Compound: Aspartate 1-decarboxylase beta chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-23)
• Chain 'D':
  Compound: Aspartate 1-decarboxylase alpha chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-End)
    • conflict (0)
• Chain 'E':
  Compound: Aspartate 1-decarboxylase beta chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-23)
• Chain 'F':
  Compound: Aspartate 1-decarboxylase alpha chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-End)
    • conflict (0)
• Chain 'G':
  Compound: Aspartate 1-decarboxylase beta chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-23)
• Chain 'H':
  Compound: Aspartate 1-decarboxylase alpha chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-End)
    • conflict (0)
• Chain 'I':
  Compound: Aspartate 1-decarboxylase beta chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-23)
• Chain 'J':
  Compound: Aspartate 1-decarboxylase alpha chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-End)
    • conflict (0)
• Chain 'K':
  Compound: Aspartate 1-decarboxylase beta chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-23)
• Chain 'L':
  Compound: Aspartate 1-decarboxylase alpha chain
  Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
  Gene: panD, Rv3601c, MTCY07H7B.21
  Database cross-references and differences (RAF-indexed):
  • Uniprot P9WIL3 (0-End)
    • conflict (0)
• Heterogens: VGL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records:
  

  >6oyyA (A:)
  mlrtmlkskihratvtcadlhyvg
  

  
  
• Chain 'B':
  Sequence, based on SEQRES records:
  

  >6oyyB (B:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpidmghdpafvpenagelldprlgvglehhh
  hhh
  

  
  Sequence, based on observed residues (ATOM records):
  

  >6oyyB (B:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpi
  

  
  
• Chain 'C':
  Sequence; same for both SEQRES and ATOM records:
  

  >6oyyC (C:)
  mlrtmlkskihratvtcadlhyvg
  

  
  
• Chain 'D':
  Sequence, based on SEQRES records:
  

  >6oyyD (D:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpidmghdpafvpenagelldprlgvglehhh
  hhh
  

  
  Sequence, based on observed residues (ATOM records):
  

  >6oyyD (D:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpi
  

  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records:
  

  >6oyyE (E:)
  mlrtmlkskihratvtcadlhyvg
  

  
  
• Chain 'F':
  Sequence, based on SEQRES records:
  

  >6oyyF (F:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpidmghdpafvpenagelldprlgvglehhh
  hhh
  

  
  Sequence, based on observed residues (ATOM records):
  

  >6oyyF (F:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpi
  

  
  
• Chain 'G':
  Sequence; same for both SEQRES and ATOM records:
  

  >6oyyG (G:)
  mlrtmlkskihratvtcadlhyvg
  

  
  
• Chain 'H':
  Sequence, based on SEQRES records:
  

  >6oyyH (H:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpidmghdpafvpenagelldprlgvglehhh
  hhh
  

  
  Sequence, based on observed residues (ATOM records):
  

  >6oyyH (H:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpi
  

  
  
• Chain 'I':
  Sequence; same for both SEQRES and ATOM records:
  

  >6oyyI (I:)
  mlrtmlkskihratvtcadlhyvg
  

  
  
• Chain 'J':
  Sequence, based on SEQRES records:
  

  >6oyyJ (J:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpidmghdpafvpenagelldprlgvglehhh
  hhh
  

  
  Sequence, based on observed residues (ATOM records):
  

  >6oyyJ (J:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpi
  

  
  
• Chain 'K':
  Sequence; same for both SEQRES and ATOM records:
  

  >6oyyK (K:)
  mlrtmlkskihratvtcadlhyvg
  

  
  
• Chain 'L':
  Sequence, based on SEQRES records:
  

  >6oyyL (L:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpidmghdpafvpenagelldprlgvglehhh
  hhh
  

  
  Sequence, based on observed residues (ATOM records):
  

  >6oyyL (L:)
  xvtidadlmdaadllegeqvtivdidngarlvtyaitgergsgvigingaaahlvhpgdl
  viliayatmddarartyqprivfvdaynkpi