PDB entry 6oy9

View 6oy9 on RCSB PDB site
Description: structure of the rhodopsin-transducin complex
Deposited on 2019-05-14, released 2019-07-24
The last revision was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Gt-alpha/Gi1-alpha chimera
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04695 (Start-209)
    • PDB 6OY9 (210-358)
  • Chain 'B':
    Compound: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62871 (Start-339)
      • conflict (70)
  • Chain 'G':
    Compound: Guanine nucleotide-binding protein G(T) subunit gamma-T1
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: rhodopsin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: RET

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6oy9A (A:)
mahhhhhhamgagasaeekhsrelekklkedaekdartvkllllgagesgkstivkqmki
ihqdgysleeclefiaiiygntlqsilaivramttlniqygdsarqddarklmhmadtie
egtmpkemsdiiqrlwkdsgiqacfdraseyqlndsagyylsdlerlvtpgyvpteqdvl
rsrvkttgiietqfsfkdlnfrmfdvggqrserkkwihcfegvtaiifcvalsdydmvlv
eddevnrmhesmhlfnsicnnkwftdtsiilflnkkdlfeekikksplsicfpdyagsnt
yeeagnyikvqflelnmrrdvkeiyshmtcatdtqnvkfvfdavtdiiikenlkdcglf

    Sequence, based on observed residues (ATOM records):
    >6oy9A (A:)
saeekhsrelekklkedaekdartvkllllgagesgkstivkqmkiihqdtgiietqfsf
kdlnfrmfdvggqrserkkwihcfegvtaiifcvalsdydmvlveddevnrmhesmhlfn
sicnnkwftdtsiilflnkkdlfeekikksplsicfpdyagsntyeeagnyikvqfleln
mrrdvkeiyshmtcatdtqnvkfvfdavtdiiikenlkdcglf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6oy9B (B:)
mseldqlrqeaeqlknqirdarkacadatlsqitnnidpvgriqmrtrrtlrghlakiya
mhwgtdsrlllsasqdgkliiwdsyttnkvhaiplrsswvmtcayapsgnyvacggldni
csiynlktregnvrvsrelaghtgylsccrflddnqivtssgdttcalwdietgqqtttf
tghtgdvmslslapdtrlfvsgacdasaklwdvregmcrqtftghesdinaicffpngna
fatgsddatcrlfdlradqelmtyshdniicgitsvsfsksgrlllagyddfncnvwdal
kadragvlaghdnrvsclgvtddgmavatgswdsflkiwn

    Sequence, based on observed residues (ATOM records):
    >6oy9B (B:)
seldqlrqeaeqlknqirdarkacadatlsqitnnidpvgriqmrtrrtlrghlakiyam
hwgtdsrlllsasqdgkliiwdsyttnkvhaiplrsswvmtcayapsgnyvacggldnic
siynlktregnvrvsrelaghtgylsccrflddnqivtssgdttcalwdietgqqtttft
ghtgdvmslslapdtrlfvsgacdasaklwdvregmcrqtftghesdinaicffpngnaf
atgsddatcrlfdlradqelmtyshdniicgitsvsfsksgrlllagyddfncnvwdalk
adragvlaghdnrvsclgvtddgmavatgswdsflkiwn

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6oy9G (G:)
mpviniedpviniedltekdklkmevdqlkkevtlermlvskcceefrdyveersgedpl
vkgipedknpfkelkggcvis

    Sequence, based on observed residues (ATOM records):
    >6oy9G (G:)
dltekdklkmevdqlkkevtlermlvskcceefrdyveersgedplvkgipedknpfkel

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6oy9R (R:)
mngtegpnfyvpfsnktgvvrspfeapqyylaepwqfsmlaaymfllimlgfpinfltly
vtvqhkklrtplnyillnlavadlfmvfggftttlytslhgyfvfgptgcnlegffatlg
geialwslvvlaieryvvvckpmsnfrfgenhaimgvaftwvmalacaapplvgwsryip
egmqcscgidyytpheetnnesfviymfvvhfiipliviffcygqlvftvkeaaaqqqes
attqkaekevtrmviimviaflicwlpyagvafyifthqgsdfgpifmtipaffaktsav
ynpviyimmnkqfrncmvttlccgknplgddeasttvsktetsqvapa

    Sequence, based on observed residues (ATOM records):
    >6oy9R (R:)
mngtegpnfyvpfsnktgvvrspfeapqyylaepwqfsmlaaymfllimlgfpinfltly
vtvqhkklrtplnyillnlavadlfmvfggftttlytslhgyfvfgptgcnlegffatlg
geialwslvvlaieryvvvckpmsnfrfgenhaimgvaftwvmalacaapplvgwsryip
egmqcscgidyytpheetnnesfviymfvvhfiipliviffcygqlvftvkeaaaqqqes
attqkaekevtrmviimviaflicwlpyagvafyifthqgsdfgpifmtipaffaktsav
ynpviyimmnkqfrncmvttlccgkn