PDB entry 6oxl

View 6oxl on RCSB PDB site
Description: cryo-em structure of phosphorylated ap-2 (mu e302k) bound to necap in the presence of ss dna
Deposited on 2019-05-13, released 2019-09-11
The last revision was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ap-2 complex subunit alpha-2
    Species: Mus musculus [TaxId:10090]
    Gene: Ap2a2, Adtab
    Database cross-references and differences (RAF-indexed):
    • PDB 6OXL
  • Chain 'B':
    Compound: ap-2 complex subunit beta
    Species: Mus musculus [TaxId:10090]
    Gene: AP2B1, CLAPB1
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: ap-2 complex subunit mu
    Species: Mus musculus [TaxId:10090]
    Gene: Ap2m1, Clapm1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P84091 (0-434)
      • engineered mutation (301)
  • Chain 'N':
    Compound: Adaptin ear-binding coat-associated protein 2
    Species: Mus musculus [TaxId:10090]
    Gene: Necap2
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: ap-2 complex subunit sigma
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Ap2s1, Ap17, Claps2
    Database cross-references and differences (RAF-indexed):
  • Chain 'n':
    Compound: Unknown region of Adaptin ear-binding coat-associated protein 2 Ex-domain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OXL (0-6)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6oxlA (A:)
    mpavskgegmrglavfisdirnckskeaeikrinkelanirskfkgdkaldgyskkkyvc
    kllfifllghdidfghmeavnllssnrytekqigylfisvlvnsnselirlinnaikndl
    asrnptfmglalhcianvgsremaeafageipkilvagdtmdsvkqsaalcllrlyrtsp
    dlvpmgdwtsrvvhllndqhlgvvtaatslittlaqknpeefktsvslavsrlsrivtsa
    stdlqdytyyfvpapwlsvkllrllqcypppedpavrgrltecletilnkaqeppkskkv
    qhsnaknavlfeaisliihhdsepnllvracnqlgqflqhretnlrylalesmctlasse
    fsheavkthietvinalkterdvsvrqravdllyamcdrsnaqqivaemlsyletadysi
    reeivlkvailaekyavdytwyvdtilnliriagdyvseevwyrviqivinrddvqgyaa
    ktvfealqapachenlvkvggyilgefgnliagdprsspliqfnllhskfhlcsvptral
    llstyikfvnlfpevkatiqdvlrsdsqlknadvelqqraveylrlstvastdilatvle
    emppfperessilaklkkkkg
    

    Sequence, based on observed residues (ATOM records):
    >6oxlA (A:)
    mrglavfisdirnckskeaeikrinkelanirskfkgdkaldgyskkkyvckllfifllg
    hdidfghmeavnllssnrytekqigylfisvlvnsnselirlinnaikndlasrnptfmg
    lalhcianvgsremaeafageipkilvagdtmdsvkqsaalcllrlyrtspdlvpmgdwt
    srvvhllndqhlgvvtaatslittlaqknpeefktsvslavsrlsrivtslqdytyyfvp
    apwlsvkllrllqcypppedpavrgrltecletilnkaqeppkskkvqhsnaknavlfea
    isliihhdsepnllvracnqlgqflqhretnlrylalesmctlassefsheavkthietv
    inalkterdvsvrqravdllyamcdrsnaqqivaemlsyletadysireeivlkvailae
    kyavdytwyvdtilnliriagdyvseevwyrviqivinrddvqgyaaktvfealqapach
    enlvkvggyilgefgnliasspliqfnllhskfhlcsvptralllstyikfvnlfpevka
    tiqdvlrsdsqlknadvelqqraveylrlstvastdilatvleemppfp
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6oxlB (B:)
    mtdskyfttnkkgeifelkaelnnekkekrkeavkkviaamtvgkdvsslfpdvvncmqt
    dnlelkklvylylmnyaksqpdmaimavnsfvkdcedpnpliralavrtmgcirvdkite
    ylceplrkclkdedpyvrktaavcvaklhdinaqmvedqgfldslrdliadsnpmvvana
    vaalseiseshpnsnlldlnpqninklltalnectewgqifildclsnynpkddreaqsi
    cervtprlshansavvlsavkvlmkflellpkdsdyynmllkklapplvtllsgepevqy
    valrninlivqkrpeilkqeikvffvkyndpiyvklekldimirlasqaniaqvlaelke
    yatevdvdfvrkavraigrcaikveqsaercvstlldliqtkvnyvvqeaivvirdifrk
    ypnkyesiiatlcenldsldepdaraamiwivgeyaeridnadellesflegfhdestqv
    qltlltaivklflkkpsetqelvqqvlslatqdsdnpdlrdrgyiywrllstdpvtakev
    vlsekpliseetdlieptlldelichigslasvyhkppnafvegshgihrk
    

    Sequence, based on observed residues (ATOM records):
    >6oxlB (B:)
    kyfttnkkgeifelkaelnnekkekrkeavkkviaamtvgkdvsslfpdvvncmqtdnle
    lkklvylylmnyaksqpdmaimavnsfvkdcedpnpliralavrtmgcirvdkiteylce
    plrkclkdedpyvrktaavcvaklhdinaqmvedqgfldslrdliadsnpmvvanavaal
    seisesnlldlnpqninklltalnectewgqifildclsnynpkddreaqsicervtprl
    shansavvlsavkvlmkfleldyynmllkklapplvtllsgepevqyvalrninlivqkr
    peilkqeikvffvkyndpiyvklekldimirlasqaniaqvlaelkeyatevdvdfvrka
    vraigrcaikveqsaercvstlldliqtkvnyvvqeaivvirdifrkypnkyesiiatlc
    enldsldepdaraamiwivgeyaeridnadellesflegfhdestqvqltlltaivklfl
    kkpsetqelvqqvlslatqdsdnpdlrdrgyiywrllstdpvtakevvlsekplisliep
    tlldelichigslasvyhkppnaf
    

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6oxlM (M:)
    migglfiynhkgevlisrvyrddigrnavdafrvnviharqqvrspvtniartsffhvkr
    sniwlaavtkqnvnaamvfeflykmcdvmaayfgkiseeniknnfvliyelldeildfgy
    pqnsetgalktfitqqgiksqhqtkeeqsqitsqvtgqigwrregikyrrnelfldvles
    vnllmspqgqvlsahvsgrvvmksylsgmpeckfgmndkiviekqgkgtadetsksgkqs
    iaiddctfhqcvrlskfdsersisfippdgefelmryrttkdiilpfrviplvrevgrtk
    lkvkvviksnfkpsllaqkievriptplntsgvqvicmkgkakykasenaivwkikrmag
    mkesqisaeiellptndkkkwarppismnfevpfapsglkvrylkvfepklnysdhdvik
    wvryigrsgiyetrc
    

    Sequence, based on observed residues (ATOM records):
    >6oxlM (M:)
    migglfiynhkgevlisrvyrrnavdafrvnviharqqvrspvtniartsffhvkrsniw
    laavtkqnvnaamvfeflykmcdvmaayfgkiseeniknnfvliyelldeildfgypqns
    etgalktfitqqgiksvtgqigwrregikyrrnelfldvlesvnllmspqgqvlsahvsg
    rvvmksylsgmpeckfgmndkivisiaiddctfhqcvrlrsisfippdgefelmryrttk
    diilpfrviplvrevgrtklkvkvviksnfkpsllaqkievriptplntsgvqvicmkgk
    akykasenaivwkikrmagmkesqisaeiellpkkwarppismnfevpfapsglkvrylk
    vfepklnysdhdvikwvryigrsgiyetrc
    

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6oxlN (N:)
    meeseyesvlcvkpevhvyrippratnrgyrasewqldqpswsgrlritakgkvayikle
    drtsgelfaqapvdqfpgtavesvtdssryfviriedgngrrafiglgfgdrgdafdfnv
    alqdhfkwvkqqcefakqaqnpdegpkldlgfkdgqtikinianmrkkegaagtprarpt
    sagglsllppppggksstvippsgeqlsvggslvqpavvsgsggatelwpqskpaaaata
    diwgdftkstgspssqsqpgtgwvqf
    

    Sequence, based on observed residues (ATOM records):
    >6oxlN (N:)
    esvlcvkpevhvyrippgyrasewqldqpswsgrlritakgkvayikledrtsgelfaqa
    pvdqfpgtavesvtdssryfviriedrrafiglgfgdrgdafdfnvalqdhfkwvkqqce
    fakq
    

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6oxlS (S:)
    mirfiliqnragktrlakwymqfdddekqklieevhavvtvrdakhtnfvefrnfkiiyr
    ryaglyfcicvdvndnnlayleaihnfvevlneyfhnvceldlvfnfykvytvvdemfla
    geiretsqtkvlkqllmlqsle
    

    Sequence, based on observed residues (ATOM records):
    >6oxlS (S:)
    mirfiliqnragktrlakwymqfdddekqklieevhavvtvrdakhtnfvefrnfkiiyr
    ryaglyfcicvdvndnnlayleaihnfvevlneyfhnvceldlvfnfykvytvvdemfla
    geiretsqtkvlkqllmlqsl
    

  • Chain 'n':
    Sequence; same for both SEQRES and ATOM records:
    >6oxln (n:)
    xxxxxxx