PDB entry 6ovz

View 6ovz on RCSB PDB site
Description: Crystal structure of the New Delhi metallo-beta-lactamase-1 adduct with a lysine-targeted affinity label
Class: hydrolase
Keywords: NDM-1, affinity-label, covalent inhibitor, hydrolase
Deposited on 2019-05-08, released 2019-06-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-07-10, with a file datestamp of 2019-07-05.
Experiment type: XRAY
Resolution: 2.02 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-lactamase
    Species: Escherichia coli [TaxId:562]
    Gene: blaNDM-1, bla NDM-1, APU18_05360, AZ95_0035, BANRA_05542, BET08_16280, BVL39_26630, C0R28_25820, C6985_28190, D3O91_26550, DWB25_28700, ECS01_0033, EOL26_24905, MS6198_A142, NDM1Dok01_N0175, pNDM102337_147, pNDM10505_149
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6ovza_
  • Chain 'B':
    Compound: Beta-lactamase
    Species: Escherichia coli [TaxId:562]
    Gene: blaNDM-1, bla NDM-1, APU18_05360, AZ95_0035, BANRA_05542, BET08_16280, BVL39_26630, C0R28_25820, C6985_28190, D3O91_26550, DWB25_28700, ECS01_0033, EOL26_24905, MS6198_A142, NDM1Dok01_N0175, pNDM102337_147, pNDM10505_149
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6ovzb_
  • Heterogens: N9J, FMT, N9M, ZN, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ovzA (A:)
gqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtawtd
dqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmv
aaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdska
kslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ovzA (A:)
dqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtawtddqtaqil
nwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhslt
faangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgnlg
dadtehyaasarafgaafpkasmivmshsapdsraaithtarmadkl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ovzB (B:)
gqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtawtd
dqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmv
aaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdska
kslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr

    Sequence, based on observed residues (ATOM records): (download) 
    >6ovzB (B:)
dqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtawtddqtaqil
nwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhslt
faangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgnlg
dadtehyaasarafgaafpkasmivmshsapdsraaithtarmadkl