PDB entry 6ovd

View 6ovd on RCSB PDB site
Description: Crystal structure of GluN1/GluN2A NMDA receptor agonist binding domains with glycine and antagonist, 3-ethylphenyl-ACEPC
Class: protein transport
Keywords: antagonist, transport protein, receptor, protein transport
Deposited on 2019-05-07, released 2020-05-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-05-13, with a file datestamp of 2020-05-08.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor ionotropic, NMDA 1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grin1, Nmdar1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P35439 (Start-151)
      • linker (152-153)
    • Uniprot P35439 (154-End)
    Domains in SCOPe 2.08: d6ovda_
  • Chain 'B':
    Compound: Glutamate receptor ionotropic, NMDA 2A
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grin2a
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00959 (Start-138)
      • linker (139-140)
    • Uniprot Q00959 (141-282)
      • conflict (238)
    Domains in SCOPe 2.08: d6ovdb_
  • Heterogens: N9A, GLY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6ovdA (A:)
    gmstrlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpndtspgsprhtvp
    qccygfcidlliklartmnftyevhlvadgkfgtqervnnsnkkewngmmgellsgqadm
    ivapltinneraqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqss
    vdiyfrrqvelstmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvt
    tgelffrsgfgigmrkdspwkqnvslsilkshengfmedldktwvryqecds
    

    Sequence, based on observed residues (ATOM records): (download)
    >6ovdA (A:)
    trlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgptvpqccygfcidllik
    lartmnftyevhlvadgkfgtqervnnsnkkewngmmgellsgqadmivapltinneraq
    yiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqssvdiyfrrqvelst
    myrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvttgelffrsgfgig
    mrkdspwkqnvslsilkshengfmedldktwvr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6ovdB (B:)
    sddnhlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfc
    idilkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineerse
    vvdfsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnyp
    ymhqymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifatt
    gygialqkgspwkrqidlallqfvgdgemeeletlwltgichn
    

    Sequence, based on observed residues (ATOM records): (download)
    >6ovdB (B:)
    dnhlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfcid
    ilkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersevv
    dfsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypym
    hqymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifattgy
    gialqkgspwkrqidlallqfvgdgemeeletlwltgichn