PDB entry 6out

View 6out on RCSB PDB site
Description: Asymmetric focused reconstruction of human norovirus GI.1 Norwalk strain VLP asymmetric unit in T=3 symmetry
Class: virus like particle
Keywords: Caliciviridae, Norovirus, GI.1, Norwalk, VIRUS LIKE PARTICLE
Deposited on 2019-05-05, released 2019-06-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: EM
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Norwalk virus (strain GI/Human/United States/Norwalk/1968) [TaxId:524364]
    Gene: ORF2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6outa_
  • Chain 'B':
    Compound: Capsid protein VP1
    Species: Norwalk virus (strain GI/Human/United States/Norwalk/1968) [TaxId:524364]
    Gene: ORF2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6outb_
  • Chain 'C':
    Compound: Capsid protein VP1
    Species: Norwalk virus (strain GI/Human/United States/Norwalk/1968) [TaxId:524364]
    Gene: ORF2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6outc_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6outA (A:)
mmmaskdatssvdgasgagqlvpevnasdplamdpvagsstavatagqvnpidpwiinnf
vqapqgeftispnntpgdvlfdlslgphlnpfllhlsqmyngwvgnmrvrimlagnafta
gkiivscippgfgshnltiaqatlfphviadvrtldpievpledvrnvlfhnndrnqqtm
rlvcmlytplrtgggtgdsfvvagrvmtcpspdfnflflvpptveqktrpftlpnlplss
lsnsraplpissmgispdnvqsvqfqngrctldgrlvgttpvslshvakirgtsngtvin
lteldgtpfhpfegpapigfpdlggcdwhinmtqfghssqtqydvdttpdtfvphlgsiq
angigsgnyvgvlswisppshpsgsqvdlwkipnygssiteathlapsvyppgfgevlvf
fmskmpgpgaynlpcllpqeyishlaseqaptvgeaallhyvdpdtgrnlgefkaypdgf
ltcvpngassgpqqlpingvfvfvswvsrfyqlkpvgtassargrlglrr

    Sequence, based on observed residues (ATOM records): (download) 
    >6outA (A:)
dplamdpvagsstavatagqvnpidpwiinnfvqapqgeftispnntpgdvlfdlslgph
lnpfllhlsqmyngwvgnmrvrimlagnaftagkiivscippgfgshnltiaqatlfphv
iadvrtldpievpledvrnvlfhnndrnqqtmrlvcmlytplrtgggtgdsfvvagrvmt
cpspdfnflflvpptveqktrpftlpnlplsslsnsraplpissmgispdnvqsvqfqng
rctldgrlvgttpvslshvakirgtsngtvinlteldgtpfhpfegpapigfpdlggcdw
hinmtqfghssqtqydvdttpdtfvphlgsiqangigsgnyvgvlswisppshpsgsqvd
lwkipnygssiteathlapsvyppgfgevlvffmskmpgpgaynlpcllpqeyishlase
qaptvgeaallhyvdpdtgrnlgefkaypdgfltcvpngassgpqqlpingvfvfvswvs
rfyqlkpvgtas

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6outB (B:)
mmmaskdatssvdgasgagqlvpevnasdplamdpvagsstavatagqvnpidpwiinnf
vqapqgeftispnntpgdvlfdlslgphlnpfllhlsqmyngwvgnmrvrimlagnafta
gkiivscippgfgshnltiaqatlfphviadvrtldpievpledvrnvlfhnndrnqqtm
rlvcmlytplrtgggtgdsfvvagrvmtcpspdfnflflvpptveqktrpftlpnlplss
lsnsraplpissmgispdnvqsvqfqngrctldgrlvgttpvslshvakirgtsngtvin
lteldgtpfhpfegpapigfpdlggcdwhinmtqfghssqtqydvdttpdtfvphlgsiq
angigsgnyvgvlswisppshpsgsqvdlwkipnygssiteathlapsvyppgfgevlvf
fmskmpgpgaynlpcllpqeyishlaseqaptvgeaallhyvdpdtgrnlgefkaypdgf
ltcvpngassgpqqlpingvfvfvswvsrfyqlkpvgtassargrlglrr

    Sequence, based on observed residues (ATOM records): (download) 
    >6outB (B:)
tssvdgasgagqlvpevnasdplamdpvagsstavatagqvnpidpwiinnfvqapqgef
tispnntpgdvlfdlslgphlnpfllhlsqmyngwvgnmrvrimlagnaftagkiivsci
ppgfgshnltiaqatlfphviadvrtldpievpledvrnvlfhnndrnqqtmrlvcmlyt
plrtgggtgdsfvvagrvmtcpspdfnflflvpptveqktrpftlpnlplsslsnsrapl
pissmgispdnvqsvqfqngrctldgrlvgttpvslshvakirgtsngtvinlteldgtp
fhpfegpapigfpdlggcdwhinmtqfghssqtqydvdttpdtfvphlgsiqangigsgn
yvgvlswisppshpsgsqvdlwkipnygssiteathlapsvyppgfgevlvffmskmpgp
gaynlpcllpqeyishlaseqaptvgeaallhyvdpdtgrnlgefkaypdgfltcvpnga
ssgpqqlpingvfvfvswvsrfyqlkpvgta

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6outC (C:)
mmmaskdatssvdgasgagqlvpevnasdplamdpvagsstavatagqvnpidpwiinnf
vqapqgeftispnntpgdvlfdlslgphlnpfllhlsqmyngwvgnmrvrimlagnafta
gkiivscippgfgshnltiaqatlfphviadvrtldpievpledvrnvlfhnndrnqqtm
rlvcmlytplrtgggtgdsfvvagrvmtcpspdfnflflvpptveqktrpftlpnlplss
lsnsraplpissmgispdnvqsvqfqngrctldgrlvgttpvslshvakirgtsngtvin
lteldgtpfhpfegpapigfpdlggcdwhinmtqfghssqtqydvdttpdtfvphlgsiq
angigsgnyvgvlswisppshpsgsqvdlwkipnygssiteathlapsvyppgfgevlvf
fmskmpgpgaynlpcllpqeyishlaseqaptvgeaallhyvdpdtgrnlgefkaypdgf
ltcvpngassgpqqlpingvfvfvswvsrfyqlkpvgtassargrlglrr

    Sequence, based on observed residues (ATOM records): (download) 
    >6outC (C:)
dplamdpvagsstavatagqvnpidpwiinnfvqapqgeftispnntpgdvlfdlslgph
lnpfllhlsqmyngwvgnmrvrimlagnaftagkiivscippgfgshnltiaqatlfphv
iadvrtldpievpledvrnvlfhnndrnqqtmrlvcmlytplrtgggtgdsfvvagrvmt
cpspdfnflflvpptveqktrpftlpnlplsslsnsraplpissmgispdnvqsvqfqng
rctldgrlvgttpvslshvakirgtsngtvinlteldgtpfhpfegpapigfpdlggcdw
hinmtqfghssqtqydvdttpdtfvphlgsiqangigsgnyvgvlswisppshpsgsqvd
lwkipnygssiteathlapsvyppgfgevlvffmskmpgpgaynlpcllpqeyishlase
qaptvgeaallhyvdpdtgrnlgefkaypdgfltcvpngassgpqqlpingvfvfvswvs
rfyqlkpvgta