PDB entry 6oq6

View 6oq6 on RCSB PDB site
Description: structure of the pore forming fragment of clostridium difficile toxin b in complex with vhh 5d
Deposited on 2019-04-25, released 2019-07-10
The last revision was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 2.97 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: toxin b
    Species: Clostridioides difficile [TaxId:1496]
    Gene: tcdB
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 5d
    Species: Camelidae [TaxId:9835]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OQ6

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6oq6A (A:)
    slttattaiitsslgiasgfsillvplagisagipslvnnelvlrdkatkvvdyfkhvsl
    vetegvftllddkvmmpqddlviseidfnnnsivlgkceiwrmeggsghtvtddidhffs
    apsityrephlsiydvlevqkeeldlskdlmvlpnapnrvfawetgwtpglrslendgtk
    lldrirdnyegefywryfafiadalittlkpryedtnirinldsntrsfivpiitteyir
    eklsysfygsggtyalslsqynmginielsesdvwiidvdnvvrdvtiesdkikkgdlie
    gilstlsieenkiilnsheinfsgevngsngfvsltfsileginaiievdllsksyklli
    sge
    

    Sequence, based on observed residues (ATOM records):
    >6oq6A (A:)
    fsillvplagisagipslvnnelvlrdkatkvvdyfkhvslvetegvftllddkvmmpqd
    dlviseidfnnnsivlgkceiwrmeggsghtvtddidhffsapsityrephlsiydvlev
    qkeeldlskdlmvlpnapnrvfawetgwtpglrslendgtklldrirdnyegefywryfa
    fiadalittlkpryedtnirinldsntrsfivpiitteyireklsysfygsggtyalsls
    qynmginielsesdvwiidvdnvvrdvtiesdkikkgdliegilstlsieenkiilnshe
    infsgevngsngfvsltfsileginaiievdllsksykllis
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6oq6D (D:)
    snsqvqlvesggglvqpggslrlsceasgftldyygigwfrqppgkereavsyisasart
    ilyadsvkgrftisrdnaknavylqmnslkredtavyycarrrfsassvnrwladdydvw
    grgtqvavssepktpkpqtsgapvpypdplepr
    

    Sequence, based on observed residues (ATOM records):
    >6oq6D (D:)
    sqvqlvesggglvqpggslrlsceasgftldyygigwfrqppgkereavsyisasartil
    yadsvkgrftisrdnaknavylqmnslkredtavyycarrrfsassvnrwladdydvwgr
    gtqvavss