PDB entry 6ond

View 6ond on RCSB PDB site
Description: crystal structure of desulfovibrio vulgaris carbon monoxide dehydrogenase produced without cooc, reduced
Deposited on 2019-04-21, released 2019-07-24
The last revision was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 1.72 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: carbon monoxide dehydrogenase
    Species: Desulfovibrio vulgaris [TaxId:881]
    Gene: cooS, DVU_2098
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: carbon monoxide dehydrogenase
    Species: Desulfovibrio vulgaris [TaxId:881]
    Gene: cooS, DVU_2098
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: carbon monoxide dehydrogenase
    Species: Desulfovibrio vulgaris [TaxId:881]
    Gene: cooS, DVU_2098
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: carbon monoxide dehydrogenase
    Species: Desulfovibrio vulgaris [TaxId:881]
    Gene: cooS, DVU_2098
    Database cross-references and differences (RAF-indexed):
  • Heterogens: XCC, SF4, FE, MG, CL, FES, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ondA (A:)
mwshpavrksssktirsrsiwddahamlekakaegistvwdraaeqtpackfcelgttcr
ncimgpcrianrkdgkmrlgvcgadadvivarnfgrfiaggaaghsdhgrdlietleava
egkapgytirdvaklrriaaelgvadaatrpahdvaadlvticyndfgsrrnalaflara
pqvrrdlwqrlgmtprgvdreiaemmhrthmgcdndhtsllvhaartaladgwggsmigt
elsdilfgtprprqstvnlgvlrkdavnilvhghnpvvsemilaatrepavrqaaqdaga
adinvaglcctgnellmrqgipmagnhlmtelaivtgaadaivadyqcimpslvqiaacy
htrfvttspkgrftgathvevhphnaqercreivmlaidaytrrdparvdipsqpvsims
gfsneailealggtpkplidavvagqirgfvgivgcnnpkirqdsanvtltrelirrdim
vlatgcvttaagkagllvpeaaskageglaavcrslgvppvlhmgscvdnsrilqlcall
attlgvdisdlpvgasspewysekaaaiamyavasgipthlglppnilgsenvtamalhg
lqdvvgaafmvepdpvkaadmleahivarrarlglts

    Sequence, based on observed residues (ATOM records):
    >6ondA (A:)
sktirsrsiwddahamlekakaegistvwdraaeqtpackfcelgttcrncimgpcrian
rkdgkmrlgvcgadadvivarnfgrfiaggaaghsdhgrdlietleavaegkapgytird
vaklrriaaelgvadaatrpahdvaadlvticyndfgsrrnalaflarapqvrrdlwqrl
gmtprgvdreiaemmhrthmgcdndhtsllvhaartaladgwggsmigtelsdilfgtpr
prqstvnlgvlrkdavnilvhghnpvvsemilaatrepavrqaaqdagaadinvaglcct
gnellmrqgipmagnhlmtelaivtgaadaivadyqcimpslvqiaacyhtrfvttspkg
rftgathvevhphnaqercreivmlaidaytrrdparvdipsqpvsimsgfsneaileal
ggtpkplidavvagqirgfvgivgcnnpkirqdsanvtltrelirrdimvlatgcvttaa
gkagllvpeaaskageglaavcrslgvppvlhmgscvdnsrilqlcallattlgvdisdl
pvgasspewysekaaaiamyavasgipthlglppnilgsenvtamalhglqdvvgaafmv
epdpvkaadmleahivarrarlglts

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ondB (B:)
mwshpavrksssktirsrsiwddahamlekakaegistvwdraaeqtpackfcelgttcr
ncimgpcrianrkdgkmrlgvcgadadvivarnfgrfiaggaaghsdhgrdlietleava
egkapgytirdvaklrriaaelgvadaatrpahdvaadlvticyndfgsrrnalaflara
pqvrrdlwqrlgmtprgvdreiaemmhrthmgcdndhtsllvhaartaladgwggsmigt
elsdilfgtprprqstvnlgvlrkdavnilvhghnpvvsemilaatrepavrqaaqdaga
adinvaglcctgnellmrqgipmagnhlmtelaivtgaadaivadyqcimpslvqiaacy
htrfvttspkgrftgathvevhphnaqercreivmlaidaytrrdparvdipsqpvsims
gfsneailealggtpkplidavvagqirgfvgivgcnnpkirqdsanvtltrelirrdim
vlatgcvttaagkagllvpeaaskageglaavcrslgvppvlhmgscvdnsrilqlcall
attlgvdisdlpvgasspewysekaaaiamyavasgipthlglppnilgsenvtamalhg
lqdvvgaafmvepdpvkaadmleahivarrarlglts

    Sequence, based on observed residues (ATOM records):
    >6ondB (B:)
sktirsrsiwddahamlekakaegistvwdraaeqtpackfcelgttcrncimgpcrian
rkdgkmrlgvcgadadvivarnfgrfiaggaaghsdhgrdlietleavaegkapgytird
vaklrriaaelgvadaatrpahdvaadlvticyndfgsrrnalaflarapqvrrdlwqrl
gmtprgvdreiaemmhrthmgcdndhtsllvhaartaladgwggsmigtelsdilfgtpr
prqstvnlgvlrkdavnilvhghnpvvsemilaatrepavrqaaqdagaadinvaglcct
gnellmrqgipmagnhlmtelaivtgaadaivadyqcimpslvqiaacyhtrfvttspkg
rftgathvevhphnaqercreivmlaidaytrrdparvdipsqpvsimsgfsneaileal
ggtpkplidavvagqirgfvgivgcnnpkirqdsanvtltrelirrdimvlatgcvttaa
gkagllvpeaaskageglaavcrslgvppvlhmgscvdnsrilqlcallattlgvdisdl
pvgasspewysekaaaiamyavasgipthlglppnilgsenvtamalhglqdvvgaafmv
epdpvkaadmleahivarrarlglts

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ondC (C:)
mwshpavrksssktirsrsiwddahamlekakaegistvwdraaeqtpackfcelgttcr
ncimgpcrianrkdgkmrlgvcgadadvivarnfgrfiaggaaghsdhgrdlietleava
egkapgytirdvaklrriaaelgvadaatrpahdvaadlvticyndfgsrrnalaflara
pqvrrdlwqrlgmtprgvdreiaemmhrthmgcdndhtsllvhaartaladgwggsmigt
elsdilfgtprprqstvnlgvlrkdavnilvhghnpvvsemilaatrepavrqaaqdaga
adinvaglcctgnellmrqgipmagnhlmtelaivtgaadaivadyqcimpslvqiaacy
htrfvttspkgrftgathvevhphnaqercreivmlaidaytrrdparvdipsqpvsims
gfsneailealggtpkplidavvagqirgfvgivgcnnpkirqdsanvtltrelirrdim
vlatgcvttaagkagllvpeaaskageglaavcrslgvppvlhmgscvdnsrilqlcall
attlgvdisdlpvgasspewysekaaaiamyavasgipthlglppnilgsenvtamalhg
lqdvvgaafmvepdpvkaadmleahivarrarlglts

    Sequence, based on observed residues (ATOM records):
    >6ondC (C:)
sktirsrsiwddahamlekakaegistvwdraaeqtpackfcelgttcrncimgpcrian
rkdgkmrlgvcgadadvivarnfgrfiaggaaghsdhgrdlietleavaegkapgytird
vaklrriaaelgvadaatrpahdvaadlvticyndfgsrrnalaflarapqvrrdlwqrl
gmtprgvdreiaemmhrthmgcdndhtsllvhaartaladgwggsmigtelsdilfgtpr
prqstvnlgvlrkdavnilvhghnpvvsemilaatrepavrqaaqdagaadinvaglcct
gnellmrqgipmagnhlmtelaivtgaadaivadyqcimpslvqiaacyhtrfvttspkg
rftgathvevhphnaqercreivmlaidaytrrdparvdipsqpvsimsgfsneaileal
ggtpkplidavvagqirgfvgivgcnnpkirqdsanvtltrelirrdimvlatgcvttaa
gkagllvpeaaskageglaavcrslgvppvlhmgscvdnsrilqlcallattlgvdisdl
pvgasspewysekaaaiamyavasgipthlglppnilgsenvtamalhglqdvvgaafmv
epdpvkaadmleahivarrarlglts

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ondD (D:)
mwshpavrksssktirsrsiwddahamlekakaegistvwdraaeqtpackfcelgttcr
ncimgpcrianrkdgkmrlgvcgadadvivarnfgrfiaggaaghsdhgrdlietleava
egkapgytirdvaklrriaaelgvadaatrpahdvaadlvticyndfgsrrnalaflara
pqvrrdlwqrlgmtprgvdreiaemmhrthmgcdndhtsllvhaartaladgwggsmigt
elsdilfgtprprqstvnlgvlrkdavnilvhghnpvvsemilaatrepavrqaaqdaga
adinvaglcctgnellmrqgipmagnhlmtelaivtgaadaivadyqcimpslvqiaacy
htrfvttspkgrftgathvevhphnaqercreivmlaidaytrrdparvdipsqpvsims
gfsneailealggtpkplidavvagqirgfvgivgcnnpkirqdsanvtltrelirrdim
vlatgcvttaagkagllvpeaaskageglaavcrslgvppvlhmgscvdnsrilqlcall
attlgvdisdlpvgasspewysekaaaiamyavasgipthlglppnilgsenvtamalhg
lqdvvgaafmvepdpvkaadmleahivarrarlglts

    Sequence, based on observed residues (ATOM records):
    >6ondD (D:)
ssktirsrsiwddahamlekakaegistvwdraaeqtpackfcelgttcrncimgpcria
nrkdgkmrlgvcgadadvivarnfgrfiaggaaghsdhgrdlietleavaegkapgytir
dvaklrriaaelgvadaatrpahdvaadlvticyndfgsrrnalaflarapqvrrdlwqr
lgmtprgvdreiaemmhrthmgcdndhtsllvhaartaladgwggsmigtelsdilfgtp
rprqstvnlgvlrkdavnilvhghnpvvsemilaatrepavrqaaqdagaadinvaglcc
tgnellmrqgipmagnhlmtelaivtgaadaivadyqcimpslvqiaacyhtrfvttspk
grftgathvevhphnaqercreivmlaidaytrrdparvdipsqpvsimsgfsneailea
lggtpkplidavvagqirgfvgivgcnnpkirqdsanvtltrelirrdimvlatgcvtta
agkagllvpeaaskageglaavcrslgvppvlhmgscvdnsrilqlcallattlgvdisd
lpvgasspewysekaaaiamyavasgipthlglppnilgsenvtamalhglqdvvgaafm
vepdpvkaadmleahivarrarlglts