PDB entry 6omm

View 6omm on RCSB PDB site
Description: cryo-em structure of formyl peptide receptor 2/lipoxin a4 receptor in complex with gi
Deposited on 2019-04-19, released 2020-02-26
The last revision was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: EM
Resolution: 3.17 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Guanine nucleotide-binding protein G(i) subunit alpha-1
    Species: Homo sapiens [TaxId:9606]
    Gene: GNAI1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63096 (Start-352)
      • engineered mutation (201)
      • engineered mutation (324)
      • engineered mutation (326)
  • Chain 'B':
    Compound: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
    Species: Homo sapiens [TaxId:9606]
    Gene: GNB1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62873 (Start-352)
      • engineered mutation (18)
      • engineered mutation (142)
      • engineered mutation (249)
  • Chain 'C':
    Compound: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
    Species: Homo sapiens [TaxId:9606]
    Gene: GNG2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P59768
      • engineered mutation (15)
      • engineered mutation (56)
  • Chain 'E':
    Compound: scFv16
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OMM (0-246)
  • Chain 'L':
    Compound: peptide agonist
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OMM (0-5)
  • Chain 'R':
    Compound: N-formyl peptide receptor 2
    Species: Homo sapiens [TaxId:9606]
    Gene: FPR2, FPRH1, FPRL1, LXA4R
    Database cross-references and differences (RAF-indexed):
  • Heterogens: QXV, CLR, PLM

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ommA (A:)
    gctlsaedkaaverskmidrnlredgekaarevkllllgagesgkstivkqmkiiheagy
    seeeckqykavvysntiqsiiaiiramgrlkidfgdsaraddarqlfvlagaaeegfmta
    elagvikrlwkdsgvqacfnrsreyqlndsaayylndldriaqpnyiptqqdvlrtrvkt
    tgivethftfkdlhfkmfdvgaqrserkkwihcfegvtaiifcvalsdydlvlaedeemn
    rmhesmklfdsicnnkwftdtsiilflnkkdlfeekikksplticypeyagsntyeeaaa
    yiqcqfedlnkrkdtkeiythftcstetknvqfvfdavtdviiknnlkdcglf
    

    Sequence, based on observed residues (ATOM records):
    >6ommA (A:)
    lsaedkaaverskmidrnlredgekaarevkllllgagesgkstivkqmkitgivethft
    fkdlhfkmfdvgaqrserkkwihcfegvtaiifcvalsdydlvnrmhesmklfdsicnnk
    wftdtsiilflnkkdlfeekikksplticypeyagsntyeeaaayiqcqfedlnkrkdtk
    eiythftcstetknvqfvfdavtdviiknnlkdcglf
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ommB (B:)
    hhhhhhhhmgsllqseldelrqeaeqlknqirdarkacadatlsqitnnidpvgriqmrt
    rrtlrghlakiyamhwgtdsrllvsasqdgkliiwdsyttnkvhaiplrsswvmtcayap
    sgnyvacggldnicsiynlktrqgnvrvsrelaghtgylsccrflddnqivtssgdttca
    lwdietgqqtttftghtgdvmslslapdtrlfvsgacdasaklwdvregmcrqtftghes
    dinaicffpdgnafatgsddatcrlfdlradqelmtyshdniicgitsvsfsksgrllla
    gyddfncnvwdalkadragvlaghdnrvsclgvtddgmavatgswdsflkiwn
    

    Sequence, based on observed residues (ATOM records):
    >6ommB (B:)
    delrqeaeqlknqirdarkacadatlsqitnnidpvgriqmrtrrtlrghlakiyamhwg
    tdsrllvsasqdgkliiwdsyttnkvhaiplrsswvmtcayapsgnyvacggldnicsiy
    nlktrqgnvrvsrelaghtgylsccrflddnqivtssgdttcalwdietgqqtttftght
    gdvmslslapdtrlfvsgacdasaklwdvregmcrqtftghesdinaicffpdgnafatg
    sddatcrlfdlradqelmtyshdniicgitsvsfsksgrlllagyddfncnvwdalkadr
    agvlaghdnrvsclgvtddgmavatgswdsflkiwn
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ommC (C:)
    asnntasiaqarklvqqlkmeanidrikvskaaadlmayceahakedplltpvpasqnpf
    rekkffc
    

    Sequence, based on observed residues (ATOM records):
    >6ommC (C:)
    iaqarklvqqlkmeanidrikvskaaadlmayceahakedplltpvpasqnpfr
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ommE (E:)
    vqlvesggglvqpggsrklscsasgfafssfgmhwvrqapekglewvayissgsgtiyya
    dtvkgrftisrddpkntlflqmtslrsedtamyycvrsiyyygsspfdfwgqgttltvss
    ggggsggggsggggssdivmtqatssvpvtpgesvsiscrssksllhsngntylywflqr
    pgqspqlliyrmsnlasgvperfsgsgsgtaftltisrleaedvgvyycmqhleypltfg
    agtklel
    

    Sequence, based on observed residues (ATOM records):
    >6ommE (E:)
    vqlvesggglvqpggsrklscsasgfafssfgmhwvrqapekglewvayissgsgtiyya
    dtvkgrftisrddpkntlflqmtslrsedtamyycvrsiyyygsspfdfwgqgttltvss
    sdivmtqatssvpvtpgesvsiscrssksllhsngntylywflqrpgqspqlliyrmsnl
    asgvperfsgsgsgtaftltisrleaedvgvyycmqhleypltfgagtklel
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6ommL (L:)
    wkymvx
    

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6ommR (R:)
    dykddddvdgsaenlyfqgasmetnfstplneyeevsyesagytvlrilplvvlgvtfvl
    gvlgnglviwvagfrmtrtvtticylnlaladfsftatlpflivsmamgekwpfgwflck
    lihivvdinlfgsvfligfialdrcicvlhpvwaqnhrtvslamkvivgpwilalvltlp
    vflflttvtipngdtyctfnfaswggtpeerlkvaitmltargiirfvigfslpmsivai
    cygliaakihkkgmikssrplrvltavvasfficwfpfqlvallgtvwlkemlfygkyki
    idilvnptsslaffnsclnpmlyvfvgqdfrerlihslptsleralsedsaptndtaans
    asp
    

    Sequence, based on observed residues (ATOM records):
    >6ommR (R:)
    gytvlrilplvvlgvtfvlgvlgnglviwvagfrmtrtvtticylnlaladfsftatlpf
    livsmamgekwpfgwflcklihivvdinlfgsvfligfialdrcicvlhpvwaqnhrtvs
    lamkvivgpwilalvltlpvflflttvtipngdtyctfnfaswggtpeerlkvaitmlta
    rgiirfvigfslpmsivaicygliaakihkkgmikssrplrvltavvasfficwfpfqlv
    allgtvwlkemlfygkykiidilvnptsslaffnsclnpmlyvfvgqdfrerlihsl