PDB entry 6oma

View 6oma on RCSB PDB site
Description: non-decorated head of the phage t5
Deposited on 2019-04-18, released 2019-10-02
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 7.2 Å
R-factor: N/A
AEROSPACI score: -0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Major capsid protein
    Species: ESCHERICHIA PHAGE T5 [TaxId:10726]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6omaA (A:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6omaB (B:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6omaC (C:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6omaD (D:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6omaE (E:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6omaF (F:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6omaG (G:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6omaH (H:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6omaI (I:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6omaJ (J:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6omaK (K:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6omaL (L:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6omaM (M:)
avnqsssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatw
vaastygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieah
avsieeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhgl
klsklvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakans
aefavivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas

    Sequence, based on observed residues (ATOM records):
    >6omaM (M:)
sssvevssesyetifsqriirdlqkelvvgalfeelpmsskiltmlvepdagkatwvaas
tygtdtttgeevkgalkeihfstyklaaksfitdeteedaifsllpllrkrlieahavsi
eeafmtgdgsgkpkglltlasedsakvvteakadgsvlvtaktisklrrklgrhglklsk
lvlivsmdayydlledeewqdvaqvgndsvklqgqvgriyglpvvvseyfpakansaefa
vivykdnfvmprqravtvererqagkqrdayyvtqrvnlqryfangvvsgtyaas