PDB entry 6olj

View 6olj on RCSB PDB site
Description: cryoem structure of pilb from geobacter metallireducens: c2ccocco conformation
Deposited on 2019-04-16, released 2019-11-20
The last revision was dated 2020-01-15, with a file datestamp of 2020-01-10.
Experiment type: EM
Resolution: 7.8 Å
R-factor: N/A
AEROSPACI score: -0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type IV pilus biogenesis ATPase PilB
    Species: Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) [TaxId:269799]
    Gene: pilB, Gmet_1393
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Type IV pilus biogenesis ATPase PilB
    Species: Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) [TaxId:269799]
    Gene: pilB, Gmet_1393
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Type IV pilus biogenesis ATPase PilB
    Species: Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) [TaxId:269799]
    Gene: pilB, Gmet_1393
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Type IV pilus biogenesis ATPase PilB
    Species: Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) [TaxId:269799]
    Gene: pilB, Gmet_1393
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Type IV pilus biogenesis ATPase PilB
    Species: Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) [TaxId:269799]
    Gene: pilB, Gmet_1393
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Type IV pilus biogenesis ATPase PilB
    Species: Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) [TaxId:269799]
    Gene: pilB, Gmet_1393
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6oljA (A:)
mgsshhhhhhssglvprgshmqasrlgellvrnnvitkeqlakaleeqksadgqqrlgsi
liknglisepdltsflskqygvpsinlsefeaeqavvkiipadvaqkyqivpvnragstl
iiamadpsnifaiddikfmtgynvevvvasesaikaaidkyydqsasladvmgdlemddl
evidtddevdvssleratedapvvklvnliltdaikrkasdihiepyersfrvryridgv
lyevmkpplklknaitsrikimaeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfg
ekvvlrlldksnlqldmtklgyepdalhyfkeaihkpfgmvlvtgptgsgktvslysalg
elnkttenistaedpvefnfaginqvqmhediglnfaaalrsflrqdpdiimigeirdfe
taeiaikaaltghlvlstlhtndapatinrllnmgvepflvasavnlitaqrlarrvcse
ckqpeeipiqalidagvspdeapsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirel
ilngantaeikresmrlgiktmrqsgltklkegvtsfeevlrvtvadd

    Sequence, based on observed residues (ATOM records):
    >6oljA (A:)
pvvklvnliltdaikrkasdihiepyersfrvryridgvlyevmkpplklknaitsriki
maeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfgekvvlrlldksnlqldmtklg
yepdalhyfkeaihkpfgmvlvtgptgsgktvslysalgelnkttenistaedpvefnfa
ginqvqmhediglnfaaalrsflrqdpdiimigeirdfetaeiaikaaltghlvlstlht
ndapatinrllnmgvepflvasavnlitaqrlarrvcseckqpeeipiqalidagvspde
apsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirelilngantaeikresmrlgikt
mrqsgltklkegvtsfeevlrvtvadd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6oljB (B:)
mgsshhhhhhssglvprgshmqasrlgellvrnnvitkeqlakaleeqksadgqqrlgsi
liknglisepdltsflskqygvpsinlsefeaeqavvkiipadvaqkyqivpvnragstl
iiamadpsnifaiddikfmtgynvevvvasesaikaaidkyydqsasladvmgdlemddl
evidtddevdvssleratedapvvklvnliltdaikrkasdihiepyersfrvryridgv
lyevmkpplklknaitsrikimaeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfg
ekvvlrlldksnlqldmtklgyepdalhyfkeaihkpfgmvlvtgptgsgktvslysalg
elnkttenistaedpvefnfaginqvqmhediglnfaaalrsflrqdpdiimigeirdfe
taeiaikaaltghlvlstlhtndapatinrllnmgvepflvasavnlitaqrlarrvcse
ckqpeeipiqalidagvspdeapsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirel
ilngantaeikresmrlgiktmrqsgltklkegvtsfeevlrvtvadd

    Sequence, based on observed residues (ATOM records):
    >6oljB (B:)
pvvklvnliltdaikrkasdihiepyersfrvryridgvlyevmkpplklknaitsriki
maeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfgekvvlrlldksnlqldmtklg
yepdalhyfkeaihkpfgmvlvtgptgsgktvslysalgelnkttenistaedpvefnfa
ginqvqmhediglnfaaalrsflrqdpdiimigeirdfetaeiaikaaltghlvlstlht
ndapatinrllnmgvepflvasavnlitaqrlarrvcseckqpeeipiqalidagvspde
apsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirelilngantaeikresmrlgikt
mrqsgltklkegvtsfeevlrvtvadd

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6oljC (C:)
mgsshhhhhhssglvprgshmqasrlgellvrnnvitkeqlakaleeqksadgqqrlgsi
liknglisepdltsflskqygvpsinlsefeaeqavvkiipadvaqkyqivpvnragstl
iiamadpsnifaiddikfmtgynvevvvasesaikaaidkyydqsasladvmgdlemddl
evidtddevdvssleratedapvvklvnliltdaikrkasdihiepyersfrvryridgv
lyevmkpplklknaitsrikimaeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfg
ekvvlrlldksnlqldmtklgyepdalhyfkeaihkpfgmvlvtgptgsgktvslysalg
elnkttenistaedpvefnfaginqvqmhediglnfaaalrsflrqdpdiimigeirdfe
taeiaikaaltghlvlstlhtndapatinrllnmgvepflvasavnlitaqrlarrvcse
ckqpeeipiqalidagvspdeapsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirel
ilngantaeikresmrlgiktmrqsgltklkegvtsfeevlrvtvadd

    Sequence, based on observed residues (ATOM records):
    >6oljC (C:)
pvvklvnliltdaikrkasdihiepyersfrvryridgvlyevmkpplklknaitsriki
maeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfgekvvlrlldksnlqldmtklg
yepdalhyfkeaihkpfgmvlvtgptgsgktvslysalgelnkttenistaedpvefnfa
ginqvqmhediglnfaaalrsflrqdpdiimigeirdfetaeiaikaaltghlvlstlht
ndapatinrllnmgvepflvasavnlitaqrlarrvcseckqpeeipiqalidagvspde
apsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirelilngantaeikresmrlgikt
mrqsgltklkegvtsfeevlrvtvadd

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6oljD (D:)
mgsshhhhhhssglvprgshmqasrlgellvrnnvitkeqlakaleeqksadgqqrlgsi
liknglisepdltsflskqygvpsinlsefeaeqavvkiipadvaqkyqivpvnragstl
iiamadpsnifaiddikfmtgynvevvvasesaikaaidkyydqsasladvmgdlemddl
evidtddevdvssleratedapvvklvnliltdaikrkasdihiepyersfrvryridgv
lyevmkpplklknaitsrikimaeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfg
ekvvlrlldksnlqldmtklgyepdalhyfkeaihkpfgmvlvtgptgsgktvslysalg
elnkttenistaedpvefnfaginqvqmhediglnfaaalrsflrqdpdiimigeirdfe
taeiaikaaltghlvlstlhtndapatinrllnmgvepflvasavnlitaqrlarrvcse
ckqpeeipiqalidagvspdeapsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirel
ilngantaeikresmrlgiktmrqsgltklkegvtsfeevlrvtvadd

    Sequence, based on observed residues (ATOM records):
    >6oljD (D:)
pvvklvnliltdaikrkasdihiepyersfrvryridgvlyevmkpplklknaitsriki
maeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfgekvvlrlldksnlqldmtklg
yepdalhyfkeaihkpfgmvlvtgptgsgktvslysalgelnkttenistaedpvefnfa
ginqvqmhediglnfaaalrsflrqdpdiimigeirdfetaeiaikaaltghlvlstlht
ndapatinrllnmgvepflvasavnlitaqrlarrvcseckqpeeipiqalidagvspde
apsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirelilngantaeikresmrlgikt
mrqsgltklkegvtsfeevlrvtvadd

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6oljE (E:)
mgsshhhhhhssglvprgshmqasrlgellvrnnvitkeqlakaleeqksadgqqrlgsi
liknglisepdltsflskqygvpsinlsefeaeqavvkiipadvaqkyqivpvnragstl
iiamadpsnifaiddikfmtgynvevvvasesaikaaidkyydqsasladvmgdlemddl
evidtddevdvssleratedapvvklvnliltdaikrkasdihiepyersfrvryridgv
lyevmkpplklknaitsrikimaeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfg
ekvvlrlldksnlqldmtklgyepdalhyfkeaihkpfgmvlvtgptgsgktvslysalg
elnkttenistaedpvefnfaginqvqmhediglnfaaalrsflrqdpdiimigeirdfe
taeiaikaaltghlvlstlhtndapatinrllnmgvepflvasavnlitaqrlarrvcse
ckqpeeipiqalidagvspdeapsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirel
ilngantaeikresmrlgiktmrqsgltklkegvtsfeevlrvtvadd

    Sequence, based on observed residues (ATOM records):
    >6oljE (E:)
pvvklvnliltdaikrkasdihiepyersfrvryridgvlyevmkpplklknaitsriki
maeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfgekvvlrlldksnlqldmtklg
yepdalhyfkeaihkpfgmvlvtgptgsgktvslysalgelnkttenistaedpvefnfa
ginqvqmhediglnfaaalrsflrqdpdiimigeirdfetaeiaikaaltghlvlstlht
ndapatinrllnmgvepflvasavnlitaqrlarrvcseckqpeeipiqalidagvspde
apsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirelilngantaeikresmrlgikt
mrqsgltklkegvtsfeevlrvtvadd

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6oljF (F:)
mgsshhhhhhssglvprgshmqasrlgellvrnnvitkeqlakaleeqksadgqqrlgsi
liknglisepdltsflskqygvpsinlsefeaeqavvkiipadvaqkyqivpvnragstl
iiamadpsnifaiddikfmtgynvevvvasesaikaaidkyydqsasladvmgdlemddl
evidtddevdvssleratedapvvklvnliltdaikrkasdihiepyersfrvryridgv
lyevmkpplklknaitsrikimaeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfg
ekvvlrlldksnlqldmtklgyepdalhyfkeaihkpfgmvlvtgptgsgktvslysalg
elnkttenistaedpvefnfaginqvqmhediglnfaaalrsflrqdpdiimigeirdfe
taeiaikaaltghlvlstlhtndapatinrllnmgvepflvasavnlitaqrlarrvcse
ckqpeeipiqalidagvspdeapsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirel
ilngantaeikresmrlgiktmrqsgltklkegvtsfeevlrvtvadd

    Sequence, based on observed residues (ATOM records):
    >6oljF (F:)
pvvklvnliltdaikrkasdihiepyersfrvryridgvlyevmkpplklknaitsriki
maeldiaerrlpqdgrikiklgggqdmdyrvsvlptlfgekvvlrlldksnlqldmtklg
yepdalhyfkeaihkpfgmvlvtgptgsgktvslysalgelnkttenistaedpvefnfa
ginqvqmhediglnfaaalrsflrqdpdiimigeirdfetaeiaikaaltghlvlstlht
ndapatinrllnmgvepflvasavnlitaqrlarrvcseckqpeeipiqalidagvspde
apsyvcykgtgcvkcnntgykgrvgfyqvmpmleeirelilngantaeikresmrlgikt
mrqsgltklkegvtsfeevlrvtvadd