PDB entry 6oih

View 6oih on RCSB PDB site
Description: crystal structure of o-antigen polysaccharide abc-transporter
Deposited on 2019-04-09, released 2019-04-17
The last revision was dated 2019-04-24, with a file datestamp of 2019-04-19.
Experiment type: XRAY
Resolution: 3.85 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ABC transporter
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: abcT4, aq_1094
    Database cross-references and differences (RAF-indexed):
    • Uniprot O67181 (0-233)
      • expression tag (234-236)
  • Chain 'B':
    Compound: ABC transporter
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: abcT4, aq_1094
    Database cross-references and differences (RAF-indexed):
    • Uniprot O67181 (0-233)
      • expression tag (234-237)
  • Chain 'C':
    Compound: Transport permease protein
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: abcT3, aq_1095
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Transport permease protein
    Species: Aquifex aeolicus (strain VF5) [TaxId:224324]
    Gene: abcT3, aq_1095
    Database cross-references and differences (RAF-indexed):
  • Heterogens: LDA

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6oihA (A:)
irvfdvwkkykyykkpqdrlkeiifrkpfheelwvlkginleiekgevlgivgpngagks
tllkvitgvtepdkgfversgkvvgllelgtgfnyelsgleniyvnasllglsrreidek
lesiiefselddfinkplktyssgmimrlafsiaihtepecfiidealavgdahfqqkcf
rklkehkqkggsiifvshdmnavkilcdraillhkgeiieegspetvtqayyklklhhhh
hh

    Sequence, based on observed residues (ATOM records):
    >6oihA (A:)
irvfdvwkkykyykkpqdrlkeiifrkpfheelwvlkginleiekgevlgivgpngagks
tllkvitgvtepdkgfversgkvvgllelgtgfnyelsgleniyvnasllglsrreidek
lesiiefselddfinkplktyssgmimrlafsiaihtepecfiidealavgdahfqqkcf
rklkehkqkggsiifvshdmnavkilcdraillhkgeiieegspetvtqayyklklh

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6oihB (B:)
irvfdvwkkykyykkpqdrlkeiifrkpfheelwvlkginleiekgevlgivgpngagks
tllkvitgvtepdkgfversgkvvgllelgtgfnyelsgleniyvnasllglsrreidek
lesiiefselddfinkplktyssgmimrlafsiaihtepecfiidealavgdahfqqkcf
rklkehkqkggsiifvshdmnavkilcdraillhkgeiieegspetvtqayyklklhhhh
hh

    Sequence, based on observed residues (ATOM records):
    >6oihB (B:)
irvfdvwkkykyykkpqdrlkeiifrkpfheelwvlkginleiekgevlgivgpngagks
tllkvitgvtepdkgfversgkvvgllelgtgfnyelsgleniyvnasllglsrreidek
lesiiefselddfinkplktyssgmimrlafsiaihtepecfiidealavgdahfqqkcf
rklkehkqkggsiifvshdmnavkilcdraillhkgeiieegspetvtqayyklklhh

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6oihC (C:)
nlslilelvrqeiknryadtvlgiwwaflwpillvliytlifshligaklghentvyays
iylssgifpwfffsnslsritgiftekkflftkipirlevfpvvviiselinyligislv
tlisfitlgfegikyfylfpvalylmivysfsigmvlgtlnvffrdikeiigvflqiffw
ftpivytldilppfvkkliyynpmypvvsihhlvfvnyldlhlysllgfllasplvffvs
yyffkklekdikdf

    Sequence, based on observed residues (ATOM records):
    >6oihC (C:)
nlslilelvrqeiknryadtvlgiwwaflwpillvliytlifshligaktvyaysiylss
gifpwfffsnslsritgiftekkflftkipirlevfpvvviiselinyligislvtlisf
itlgfegikyfylfpvalylmivysfsigmvlgtlnvffrdikeiigvflqiffwftpiv
ytldilppfvkkliyynpmypvvsihhlvfvnyldlhlysllgfllasplvffvsyyffk
klekdikdf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6oihD (D:)
nlslilelvrqeiknryadtvlgiwwaflwpillvliytlifshligaklghentvyays
iylssgifpwfffsnslsritgiftekkflftkipirlevfpvvviiselinyligislv
tlisfitlgfegikyfylfpvalylmivysfsigmvlgtlnvffrdikeiigvflqiffw
ftpivytldilppfvkkliyynpmypvvsihhlvfvnyldlhlysllgfllasplvffvs
yyffkklekdikdf

    Sequence, based on observed residues (ATOM records):
    >6oihD (D:)
nlslilelvrqeiknryadtvlgiwwaflwpillvliytlifshligtvyaysiylssgi
fpwfffsnslsritgiftekkflftkipirlevfpvvviiselinyligislvtlisfit
lgfegikyfylfpvalylmivysfsigmvlgtlnvffrdikeiigvflqiffwftpivyt
ldilppfvkkliyynpmypvvsihhlvfvnyldlhlysllgfllasplvffvsyyffkkl
ekdikdf