PDB entry 6ohy

View 6ohy on RCSB PDB site
Description: chimpanzee siv env trimeric ectodomain.
Deposited on 2019-04-08, released 2019-06-05
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: EM
Resolution: 4.1 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: envelope glycoprotein gp160
    Species: Simian immunodeficiency virus [TaxId:11723]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1A234 (0-456)
      • engineered mutation (135)
      • conflict (453)
  • Chain 'B':
    Compound: envelope glycoprotein gp160
    Species: Simian immunodeficiency virus [TaxId:11723]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1A234 (0-150)
      • conflict (90)
  • Chain 'C':
    Compound: envelope glycoprotein gp160
    Species: Simian immunodeficiency virus [TaxId:11723]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1A234 (0-456)
      • engineered mutation (135)
      • conflict (453)
  • Chain 'D':
    Compound: envelope glycoprotein gp160
    Species: Simian immunodeficiency virus [TaxId:11723]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1A234 (0-456)
      • engineered mutation (135)
      • conflict (453)
  • Chain 'E':
    Compound: envelope glycoprotein gp160
    Species: Simian immunodeficiency virus [TaxId:11723]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1A234 (0-150)
      • conflict (90)
  • Chain 'F':
    Compound: envelope glycoprotein gp160
    Species: Simian immunodeficiency virus [TaxId:11723]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1A234 (0-150)
      • conflict (90)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ohyA (A:)
enwwvtvyygvpvwreakttlfcasdaksysteahniwatqacvptdptpqevllpnvte
efnmwenymvdqmqediislweqslkpcvkltplcvtltcnnptntsctnstddrlgdmr
ncsfnvttelrdkkrkvyslfyveditaignnstyrlincnttaitqacpktsfepipih
ycapagfallkcndidykgnetcknvstvhcthgikpvattqlilngstadnqtvaridp
senlaiiqlkdpvkitcrrpgnntrgqiqigpamtfynienvvgdtrkayceingtqwak
alnetkevlrnilrknisfmvpsggdpevtnhhfncggeffycntseiinitkinktenm
tiipcrirqivnswmrvgkgifappirgnitctsnitgmlleihknredqgedqdqnnty
vcltggnmkdiwrselykykiveiqplgvaptkcrry

    Sequence, based on observed residues (ATOM records):
    >6ohyA (A:)
enwwvtvyygvpvwreakttlfcasdaksyhniwatqacvptdptpqevllpnvteefnm
wenymvdqmqediislweqslkpcvkltplcvtltcnnptntddrlgdmrncsfnvttel
rdkkrkvyslfyveditaignnstyrlincnttaitqacpktsfepipihycapagfall
kcndidykgnetcknvstvhcthgikpvattqlilngstadnqtvaridpsenlaiiqlk
dpvkitcrrpgnntrgqiqigpamtfynienvvgdtrkayceingtqwakalnetkevlr
nilrknisfmvpsggdpevtnhhfncggeffycntseiinitkinktenmtiipcrirqi
vnswmrvgkgifappirgnitctsnitgmlleihknredqgedqdqnntyvcltggnmkd
iwrselykykiveiqplgvaptkcrry

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ohyB (B:)
lgalflgflgaagstmgaasvvltvqarqlltgivqqqnnllrapeaqqhllqlsvwgik
qlqarvlaverylrdqqllglwgctgkticctavrwnktwgnisdyqviwnnytwqqwdr
evnnytgliytlleeantqqeknekelleld

    Sequence, based on observed residues (ATOM records):
    >6ohyB (B:)
lgalflgflgaagstmgaasvvlsvwgikqlqarvlaverylrdqqllglwgctgkticc
tavrwnktwgnisdyqviwnnytwqqwdrevnnytgliytlleeantqqeknekelleld

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ohyC (C:)
enwwvtvyygvpvwreakttlfcasdaksysteahniwatqacvptdptpqevllpnvte
efnmwenymvdqmqediislweqslkpcvkltplcvtltcnnptntsctnstddrlgdmr
ncsfnvttelrdkkrkvyslfyveditaignnstyrlincnttaitqacpktsfepipih
ycapagfallkcndidykgnetcknvstvhcthgikpvattqlilngstadnqtvaridp
senlaiiqlkdpvkitcrrpgnntrgqiqigpamtfynienvvgdtrkayceingtqwak
alnetkevlrnilrknisfmvpsggdpevtnhhfncggeffycntseiinitkinktenm
tiipcrirqivnswmrvgkgifappirgnitctsnitgmlleihknredqgedqdqnnty
vcltggnmkdiwrselykykiveiqplgvaptkcrry

    Sequence, based on observed residues (ATOM records):
    >6ohyC (C:)
enwwvtvyygvpvwreakttlfcasdaksyhniwatqacvptdptpqevllpnvteefnm
wenymvdqmqediislweqslkpcvkltplcvtltcnnptntddrlgdmrncsfnvttel
rdkkrkvyslfyveditaignnstyrlincnttaitqacpktsfepipihycapagfall
kcndidykgnetcknvstvhcthgikpvattqlilngstadnqtvaridpsenlaiiqlk
dpvkitcrrpgnntrgqiqigpamtfynienvvgdtrkayceingtqwakalnetkevlr
nilrknisfmvpsggdpevtnhhfncggeffycntseiinitkinktenmtiipcrirqi
vnswmrvgkgifappirgnitctsnitgmlleihknredqgedqdqnntyvcltggnmkd
iwrselykykiveiqplgvaptkcrry

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ohyD (D:)
enwwvtvyygvpvwreakttlfcasdaksysteahniwatqacvptdptpqevllpnvte
efnmwenymvdqmqediislweqslkpcvkltplcvtltcnnptntsctnstddrlgdmr
ncsfnvttelrdkkrkvyslfyveditaignnstyrlincnttaitqacpktsfepipih
ycapagfallkcndidykgnetcknvstvhcthgikpvattqlilngstadnqtvaridp
senlaiiqlkdpvkitcrrpgnntrgqiqigpamtfynienvvgdtrkayceingtqwak
alnetkevlrnilrknisfmvpsggdpevtnhhfncggeffycntseiinitkinktenm
tiipcrirqivnswmrvgkgifappirgnitctsnitgmlleihknredqgedqdqnnty
vcltggnmkdiwrselykykiveiqplgvaptkcrry

    Sequence, based on observed residues (ATOM records):
    >6ohyD (D:)
enwwvtvyygvpvwreakttlfcasdaksyhniwatqacvptdptpqevllpnvteefnm
wenymvdqmqediislweqslkpcvkltplcvtltcnnptntddrlgdmrncsfnvttel
rdkkrkvyslfyveditaignnstyrlincnttaitqacpktsfepipihycapagfall
kcndidykgnetcknvstvhcthgikpvattqlilngstadnqtvaridpsenlaiiqlk
dpvkitcrrpgnntrgqiqigpamtfynienvvgdtrkayceingtqwakalnetkevlr
nilrknisfmvpsggdpevtnhhfncggeffycntseiinitkinktenmtiipcrirqi
vnswmrvgkgifappirgnitctsnitgmlleihknredqgedqdqnntyvcltggnmkd
iwrselykykiveiqplgvaptkcrry

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ohyE (E:)
lgalflgflgaagstmgaasvvltvqarqlltgivqqqnnllrapeaqqhllqlsvwgik
qlqarvlaverylrdqqllglwgctgkticctavrwnktwgnisdyqviwnnytwqqwdr
evnnytgliytlleeantqqeknekelleld

    Sequence, based on observed residues (ATOM records):
    >6ohyE (E:)
lgalflgflgaagstmgaasvvlsvwgikqlqarvlaverylrdqqllglwgctgkticc
tavrwnktwgnisdyqviwnnytwqqwdrevnnytgliytlleeantqqeknekelleld

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ohyF (F:)
lgalflgflgaagstmgaasvvltvqarqlltgivqqqnnllrapeaqqhllqlsvwgik
qlqarvlaverylrdqqllglwgctgkticctavrwnktwgnisdyqviwnnytwqqwdr
evnnytgliytlleeantqqeknekelleld

    Sequence, based on observed residues (ATOM records):
    >6ohyF (F:)
lgalflgflgaagstmgaasvvlsvwgikqlqarvlaverylrdqqllglwgctgkticc
tavrwnktwgnisdyqviwnnytwqqwdrevnnytgliytlleeantqqeknekelleld