PDB entry 6ofd

View 6ofd on RCSB PDB site
Description: The crystal structure of octadecyloxy(naphthalen-1-yl)methylphosphonic acid in complex with red kidney bean purple acid phosphatase
Class: metal binding protein
Keywords: Purple acid phosphatase, metallohydrolases, transition state, catalysis, osteoporosis, METAL BINDING PROTEIN
Deposited on 2019-03-29, released 2019-09-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ofda1, d6ofda2
  • Chain 'B':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ofdb1, d6ofdb2
  • Chain 'C':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ofdc1, d6ofdc2
  • Chain 'D':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ofdd1, d6ofdd2
  • Heterogens: ZN, FE, NAG, MF1, NA, SO4, EDO, PGE, GOL, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ofdA (A:)
mgvvkgllalalvlnvvvvsnggkssnfvrktnknrdmpldsdvfrvppgynapqqvhit
qgdlvgramiiswvtmdepgssavrywsekngrkriakgkmstyrffnyssgfihhttir
klkyntkyyyevglrnttrrfsfitppqtgldvpytfgligdlgqsfdsnttlshyelsp
kkgqtvlfvgdlsyadrypnhdnvrwdtwgrftersvayqpwiwtagnheiefapeinet
epfkpfsyryhvpyeasqstspfwysikrasahiivlssysaygrgtpqytwlkkelrkv
krsetpwlivlmhsplynsynhhfmegeamrtkfeawfvkykvdvvfaghvhayerserv
sniaykitnglctpvkdqsapvyitigdagnygvidsnmiqpqpeysafreasfghgmfd
iknrthahfswnrnqdgvaveadsvwffnrhwypvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6ofdA (A:)
nknrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekng
rkriakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgld
vpytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrf
tersvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasa
hiivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrt
kfeawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagny
gvidsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhw
ypvdds

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ofdB (B:)
mgvvkgllalalvlnvvvvsnggkssnfvrktnknrdmpldsdvfrvppgynapqqvhit
qgdlvgramiiswvtmdepgssavrywsekngrkriakgkmstyrffnyssgfihhttir
klkyntkyyyevglrnttrrfsfitppqtgldvpytfgligdlgqsfdsnttlshyelsp
kkgqtvlfvgdlsyadrypnhdnvrwdtwgrftersvayqpwiwtagnheiefapeinet
epfkpfsyryhvpyeasqstspfwysikrasahiivlssysaygrgtpqytwlkkelrkv
krsetpwlivlmhsplynsynhhfmegeamrtkfeawfvkykvdvvfaghvhayerserv
sniaykitnglctpvkdqsapvyitigdagnygvidsnmiqpqpeysafreasfghgmfd
iknrthahfswnrnqdgvaveadsvwffnrhwypvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6ofdB (B:)
nrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrk
riakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvp
ytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfte
rsvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahi
ivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkf
eawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygv
idsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwyp
vddst

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ofdC (C:)
mgvvkgllalalvlnvvvvsnggkssnfvrktnknrdmpldsdvfrvppgynapqqvhit
qgdlvgramiiswvtmdepgssavrywsekngrkriakgkmstyrffnyssgfihhttir
klkyntkyyyevglrnttrrfsfitppqtgldvpytfgligdlgqsfdsnttlshyelsp
kkgqtvlfvgdlsyadrypnhdnvrwdtwgrftersvayqpwiwtagnheiefapeinet
epfkpfsyryhvpyeasqstspfwysikrasahiivlssysaygrgtpqytwlkkelrkv
krsetpwlivlmhsplynsynhhfmegeamrtkfeawfvkykvdvvfaghvhayerserv
sniaykitnglctpvkdqsapvyitigdagnygvidsnmiqpqpeysafreasfghgmfd
iknrthahfswnrnqdgvaveadsvwffnrhwypvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6ofdC (C:)
nrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrk
riakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvp
ytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfte
rsvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahi
ivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkf
eawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygv
idsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwyp
vdd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6ofdD (D:)
mgvvkgllalalvlnvvvvsnggkssnfvrktnknrdmpldsdvfrvppgynapqqvhit
qgdlvgramiiswvtmdepgssavrywsekngrkriakgkmstyrffnyssgfihhttir
klkyntkyyyevglrnttrrfsfitppqtgldvpytfgligdlgqsfdsnttlshyelsp
kkgqtvlfvgdlsyadrypnhdnvrwdtwgrftersvayqpwiwtagnheiefapeinet
epfkpfsyryhvpyeasqstspfwysikrasahiivlssysaygrgtpqytwlkkelrkv
krsetpwlivlmhsplynsynhhfmegeamrtkfeawfvkykvdvvfaghvhayerserv
sniaykitnglctpvkdqsapvyitigdagnygvidsnmiqpqpeysafreasfghgmfd
iknrthahfswnrnqdgvaveadsvwffnrhwypvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6ofdD (D:)
nrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrk
riakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvp
ytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfte
rsvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahi
ivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkf
eawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygv
idsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwyp
vdds