PDB entry 6of5

View 6of5 on RCSB PDB site
Description: The crystal structure of dodecyloxy(naphthalen-1-yl)methylphosphonic acid in complex with red kidney bean purple acid phosphatase
Class: metal binding protein
Keywords: Purple acid phosphatase, metallohydrolases, transition state, catalysis, osteoporosis, METAL BINDING PROTEIN
Deposited on 2019-03-28, released 2019-09-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6of5a1, d6of5a2
  • Chain 'B':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6of5b1, d6of5b2
  • Chain 'C':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6of5c1, d6of5c2
  • Chain 'D':
    Compound: Fe(3+)-Zn(2+) purple acid phosphatase
    Species: Phaseolus vulgaris [TaxId:3885]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6of5d1, d6of5d2
  • Heterogens: MFJ, ZN, FE, NAG, SO4, NA, EDO, PGE, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6of5A (A:)
knrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngr
kriakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldv
pytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrft
ersvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasah
iivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtk
feawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnyg
vidsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwy
pvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6of5A (A:)
nrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrk
riakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvp
ytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfte
rsvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahi
ivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkf
eawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygv
idsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwyp
vdds

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6of5B (B:)
knrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngr
kriakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldv
pytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrft
ersvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasah
iivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtk
feawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnyg
vidsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwy
pvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6of5B (B:)
nrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrk
riakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvp
ytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfte
rsvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahi
ivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkf
eawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygv
idsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwyp
vddst

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6of5C (C:)
knrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngr
kriakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldv
pytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrft
ersvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasah
iivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtk
feawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnyg
vidsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwy
pvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6of5C (C:)
nrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrk
riakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvp
ytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfte
rsvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahi
ivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkf
eawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygv
idsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwyp
vdd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6of5D (D:)
knrdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngr
kriakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldv
pytfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrft
ersvayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasah
iivlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtk
feawfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnyg
vidsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwy
pvddst

    Sequence, based on observed residues (ATOM records): (download) 
    >6of5D (D:)
rdmpldsdvfrvppgynapqqvhitqgdlvgramiiswvtmdepgssavrywsekngrkr
iakgkmstyrffnyssgfihhttirklkyntkyyyevglrnttrrfsfitppqtgldvpy
tfgligdlgqsfdsnttlshyelspkkgqtvlfvgdlsyadrypnhdnvrwdtwgrfter
svayqpwiwtagnheiefapeinetepfkpfsyryhvpyeasqstspfwysikrasahii
vlssysaygrgtpqytwlkkelrkvkrsetpwlivlmhsplynsynhhfmegeamrtkfe
awfvkykvdvvfaghvhayerservsniaykitnglctpvkdqsapvyitigdagnygvi
dsnmiqpqpeysafreasfghgmfdiknrthahfswnrnqdgvaveadsvwffnrhwypv
dds