PDB entry 6of3

View 6of3 on RCSB PDB site
Description: precursor ribosomal rna processing complex, state 1.
Deposited on 2019-03-28, released 2019-09-11
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease
    Species: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId:759272]
    Gene: CTHT_0066080
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: CLP1_P domain-containing protein
    Species: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId:759272]
    Gene: CTHT_0016120
    Database cross-references and differences (RAF-indexed):
    • Uniprot G0S263 (1-End)
      • initiating methionine (0)
  • Chain 'D':
    Compound: Ribonuclease
    Species: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId:759272]
    Gene: CTHT_0066080
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: CLP1_P domain-containing protein
    Species: Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId:759272]
    Gene: CTHT_0016120
    Database cross-references and differences (RAF-indexed):
    • Uniprot G0S263 (1-End)
      • initiating methionine (0)
  • Heterogens: AGS, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6of3A (A:)
msyyhhhhhhdydipttenlyfqgamgsmvqyiftpwrnraellavraqfypehtskthl
kkhhqstfqddehirsekqkavarvsmwmqrggcphmvestallvaailsdeaqgsgaag
gyavraaysaafsrfvtglldshqdkqrkqsmydvakavglpaafvelrhqatheqlpsl
trlrsaarralewiwwyywkglgpvdmvqrgvngkgvagvgdtseseekdvgeeggdaaa
rcregvvrllesdvrvggeaingpgkeellaefgealvlttldaaagntrdvgvlrraig
lmreivnggdedcmqlengkgnrdveklkeelkkgweeikrlaqekedsgddqtededvd
meaeeedkkeqqsgwvlydekewvpkpigiv

    Sequence, based on observed residues (ATOM records):
    >6of3A (A:)
mvqyiftpwrnraellavraqfypehtsfqddehirsekqkavarvsmwmqrggcphmve
stallvaailsdeaqgsgaaggyavraaysaafsrfvtglldshqdkqrkqsmydvakav
glpaafvelrhqatheqlpsltrlrsaarralewiwwyywkglgpvdqsgwvlydekewv
pkpigiv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6of3B (B:)
mhhssfqpnnsnfqrkaggrlvlstpdverfvilgnygvkvhqgevtiagatltpiddvq
wvhaphchalpvlrtandtviellpcptaqglrelarlnplfgrlwnetsdtfqiiytsa
dapkrtslrelashpawnkkiselltstrrkpspilficgpkssgkstfgrlltnrlmtd
raghksrswkpvmvldldpgqpefsppgvvsltklrrpnlappfchpglsfgekgldggn
egmttvrmhaiasvtpaldpahfiacardlfayyrrsasqeniplvvntpgwiqgtgldl
laeliavlrptevlymsedgpeetvsalreacassstipftmlpsqpnssgegggggaas
wtpatlrsmamqsyfhlspfsrdqqggpgcewnptplthlcpwrvrlagrpdergvlgiv
cydhqyapelvsdaingmvmglvriekkealrglavpgdtslsftsstsqggcddeldsd
snsssapsftssspshlnstpllplipnptgsplspqytslvglvlirgvsltasnpelh
lltpvppsvlhsfrgdelvlvagkfdaptwayveglywksnskaakrvdeerededrees
ggveeeeeqdevpwvemlhgsagrdvgsrvwrvrrdlgrs

    Sequence, based on observed residues (ATOM records):
    >6of3B (B:)
mhhssfqpnnsnfqrkaggrlvlstpdverfvilgnygvkvhqgevtiagatltpiddvq
wvhaphchalpvlrtandtviellpcptaqglrelarlnplfgrlwnetsdtfqiiytsa
dapkrtslrelashpawnkkiselltstrrkpspilficgpkssgkstfgrlltnrlmtd
raghksrswkpvmvldldpgqpefsppgvvsltklrrpnlappfchpglsfgnegmttvr
mhaiasvtpaldpahfiacardlfayyrrsasqeniplvvntpgwiqgtgldllaeliav
lrptevlymsedgpeetvsalreacassstipftmlpsqpswtpatlrsmamqsyfhlsp
fgpgcewnptplthlcpwrvrlagrpdergvlgivcydhqyapelvsdaingmvmglvri
ekkealrglavpgdtpllplipnptgsplspqytslvglvlirgvsltasnpelhlltpv
ppsvlhsfrgdelvlvagkfdaptwayveglywksnskdevpwvemlh

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6of3D (D:)
msyyhhhhhhdydipttenlyfqgamgsmvqyiftpwrnraellavraqfypehtskthl
kkhhqstfqddehirsekqkavarvsmwmqrggcphmvestallvaailsdeaqgsgaag
gyavraaysaafsrfvtglldshqdkqrkqsmydvakavglpaafvelrhqatheqlpsl
trlrsaarralewiwwyywkglgpvdmvqrgvngkgvagvgdtseseekdvgeeggdaaa
rcregvvrllesdvrvggeaingpgkeellaefgealvlttldaaagntrdvgvlrraig
lmreivnggdedcmqlengkgnrdveklkeelkkgweeikrlaqekedsgddqtededvd
meaeeedkkeqqsgwvlydekewvpkpigiv

    Sequence, based on observed residues (ATOM records):
    >6of3D (D:)
mvqyiftpwrnraellavraqfypehtsfqddehirsekqkavarvsmwmqrggcphmve
stallvaailsdeaqgsgaaggyavraaysaafsrfvtglldshqdkqrkqsmydvakav
glpaafvelrhqatheqlpsltrlrsaarralewiwwyywkglgpvdqsgwvlydekewv
pkpigiv

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6of3E (E:)
mhhssfqpnnsnfqrkaggrlvlstpdverfvilgnygvkvhqgevtiagatltpiddvq
wvhaphchalpvlrtandtviellpcptaqglrelarlnplfgrlwnetsdtfqiiytsa
dapkrtslrelashpawnkkiselltstrrkpspilficgpkssgkstfgrlltnrlmtd
raghksrswkpvmvldldpgqpefsppgvvsltklrrpnlappfchpglsfgekgldggn
egmttvrmhaiasvtpaldpahfiacardlfayyrrsasqeniplvvntpgwiqgtgldl
laeliavlrptevlymsedgpeetvsalreacassstipftmlpsqpnssgegggggaas
wtpatlrsmamqsyfhlspfsrdqqggpgcewnptplthlcpwrvrlagrpdergvlgiv
cydhqyapelvsdaingmvmglvriekkealrglavpgdtslsftsstsqggcddeldsd
snsssapsftssspshlnstpllplipnptgsplspqytslvglvlirgvsltasnpelh
lltpvppsvlhsfrgdelvlvagkfdaptwayveglywksnskaakrvdeerededrees
ggveeeeeqdevpwvemlhgsagrdvgsrvwrvrrdlgrs

    Sequence, based on observed residues (ATOM records):
    >6of3E (E:)
mhhssfqpnnsnfqrkaggrlvlstpdverfvilgnygvkvhqgevtiagatltpiddvq
wvhaphchalpvlrtandtviellpcptaqglrelarlnplfgrlwnetsdtfqiiytsa
dapkrtslrelashpawnkkiselltstrrkpspilficgpkssgkstfgrlltnrlmtd
raghksrswkpvmvldldpgqpefsppgvvsltklrrpnlappfchpglsfgnegmttvr
mhaiasvtpaldpahfiacardlfayyrrsasqeniplvvntpgwiqgtgldllaeliav
lrptevlymsedgpeetvsalreacassstipftmlpsqpswtpatlrsmamqsyfhlsp
fgpgcewnptplthlcpwrvrlagrpdergvlgivcydhqyapelvsdaingmvmglvri
ekkealrglavpgdtpllplipnptgsplspqytslvglvlirgvsltasnpelhlltpv
ppsvlhsfrgdelvlvagkfdaptwayveglywksnskdevpwvemlh