PDB entry 6oes

View 6oes on RCSB PDB site
Description: cryo-em structure of mouse rag1/2 stc complex (without nbd domain)
Deposited on 2019-03-27, released 2020-01-22
The last revision was dated 2020-08-05, with a file datestamp of 2020-07-31.
Experiment type: EM
Resolution: 3.06 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: V(D)J recombination-activating protein 1
    Species: Mus musculus [TaxId:10090]
    Gene: Rag1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15919
      • engineered mutation (961)
  • Chain 'B':
    Compound: V(D)J recombination-activating protein 2
    Species: Mus musculus [TaxId:10090]
    Gene: Rag2, Rag-2
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: V(D)J recombination-activating protein 1
    Species: Mus musculus [TaxId:10090]
    Gene: Rag1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15919
      • engineered mutation (961)
  • Chain 'D':
    Compound: V(D)J recombination-activating protein 2
    Species: Mus musculus [TaxId:10090]
    Gene: Rag2, Rag-2
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: DNA (35-mer)
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
  • Chain 'G':
    Compound: DNA (34-mer)
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
  • Chain 'I':
    Compound: DNA (5'-d(*cp*cp*tp*gp*gp*ap*tp*cp*tp*gp*gp*cp*cp*tp*g)-3')
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
  • Chain 'J':
    Compound: DNA (5'-d(*cp*cp*tp*gp*gp*ap*tp*cp*tp*gp*gp*cp*cp*tp*g)-3')
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
  • Chain 'L':
    Compound: DNA (5'-d(p*cp*ap*cp*ap*gp*tp*gp*ap*tp*ap*cp*ap*gp*cp*c)-3')
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
  • Chain 'M':
    Compound: DNA (5'-d(p*cp*ap*cp*ap*gp*tp*gp*ap*tp*gp*cp*ap*ap*a)-3')
    Species: ESCHERICHIA COLI K-12, synthetic [TaxId:83333]
  • Heterogens: CA, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6oesA (A:)
maaslpstlsfssapdeiqhpqikfsewkfklfrvrsfekapeeaqkekdssegkpyleq
spvvpekpggqnsiltqralklhpkfskkfhadgkssdkavhqarlrhfcricgnrfksd
ghsrrypvhgpvdaktqslfrkkekrvtswpdliarifridvkadvdsihptefchdcws
imhrkfssshsqvyfprkvtvewhphtpscdicftahrglkrkrhqpnvqlskklktvln
harrdrrkrtqarvsskevlkkisncskihlstkllavdfpahfvksiscqicehiladp
vetsckhlfcricilrclkvmgsycpscrypcfptdlespvksflnilnslmvkcpaqdc
neevslekynhhvsshkesketlvhinkggrprqhllsltrraqkhrlrelkiqvkefad
keeggdvkavcltlfllalrarnehrqadeleaimqgrgsglqpavclairvntflscsq
yhkmyrtvkaitgrqifqplhalrnaekvllpgyhpfewqpplknvssrtdvgiidglsg
lassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescd
gmgdvsekhgsgpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmla
desdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvreveglea
sgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvs
akpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkr
mnlkpimrmngnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpak
ecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawaseg
nqsgnklfrrfrkmnarqskcyemedvlkhhwlytskylqkfmnahnalkssgftmnske
tlgdplgiedslesqdsmef

    Sequence, based on observed residues (ATOM records):
    >6oesA (A:)
glqpavclairvntflscsqyhkmyrtvkaitgrqifqplhalrnaekvllpgyhpfewq
pplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrs
qdlddylngpftvvvkescdgmgdvsekhgsgpavpekavrfsftvmritiehgsqnvkv
feepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkf
ifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevw
rsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpn
askeerkrwqatldkhlrkrmnlkpimrmngnfarklmtqetvdavcelipseerhealr
elmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktl
ahvpeiierdgsigawasegnqsgnklfrrfrkmnarqskcyemedvlkhhwlytskylq
kfmnahna

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6oesB (B:)
mslqmvtvghnialiqpgfslmnfdgqvfffgqkgwpkrscptgvfhfdikqnhlklkpa
ifskdscylpplrypatcsykgsidsdkhqyiihggktpnnelsdkiyimsvacknnkkv
tfrctekdlvgdvpepryghsidvvysrgksmgvlfggrsympstqrttekwnsvadclp
hvflidfefgcatsyilpelqdglsfhvsiarndtvyilgghslasnirpanlyrirvdl
plgtpavnctvlpggisvssailtqtnndefvivggyqlenqkrmvcslvslgdntieis
emetpdwtsdikhskiwfgsnmgngtiflgipgdnkqamseafyfytlrcseedlsedqk
ivsnsqtstedpgdstpfedseefcfsaeatsfdgddefdtyneddeddesvtgywitcc
ptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleertlihlsegsnkyycne
hvqiaralqtpkrnpplqkppmkslhkkgsgkvltpakksflrrlfd

    Sequence, based on observed residues (ATOM records):
    >6oesB (B:)
mslqmvtvghnialiqpgfslmnfdgqvfffgqkgwpkrscptgvfhfdikqnhlklkpa
ifskdscylpplrypatcsykkhqyiihggktpnnelsdkiyimsvacknnkkvtfrcte
kdlvgdvpepryghsidvvysrgksmgvlfggrsympstqrttekwnsvadclphvflid
fefgcatsyilpelqdglsfhvsiarndtvyilgghslasnirpanlyrirvdlplgtpa
vnctvlpggisvssailtqtnndefvivggyqlenqkrmvcslvslgdntieisemetpd
wtsdikhskiwfgsnmgngtiflgipgdnkqamseafyfytlrc

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6oesC (C:)
maaslpstlsfssapdeiqhpqikfsewkfklfrvrsfekapeeaqkekdssegkpyleq
spvvpekpggqnsiltqralklhpkfskkfhadgkssdkavhqarlrhfcricgnrfksd
ghsrrypvhgpvdaktqslfrkkekrvtswpdliarifridvkadvdsihptefchdcws
imhrkfssshsqvyfprkvtvewhphtpscdicftahrglkrkrhqpnvqlskklktvln
harrdrrkrtqarvsskevlkkisncskihlstkllavdfpahfvksiscqicehiladp
vetsckhlfcricilrclkvmgsycpscrypcfptdlespvksflnilnslmvkcpaqdc
neevslekynhhvsshkesketlvhinkggrprqhllsltrraqkhrlrelkiqvkefad
keeggdvkavcltlfllalrarnehrqadeleaimqgrgsglqpavclairvntflscsq
yhkmyrtvkaitgrqifqplhalrnaekvllpgyhpfewqpplknvssrtdvgiidglsg
lassvdeypvdtiakrfrydsalvsalmdmeedilegmrsqdlddylngpftvvvkescd
gmgdvsekhgsgpavpekavrfsftvmritiehgsqnvkvfeepkpnselcckplclmla
desdhetltailspliaereamksseltlemggiprtfkfifrgtgydeklvreveglea
sgsvyictlcdttrleasqnlvfhsitrshaenlqryevwrsnpyhesveelrdrvkgvs
akpfietvpsidalhcdignaaefykifqleigevykhpnaskeerkrwqatldkhlrkr
mnlkpimrmngnfarklmtqetvdavcelipseerhealrelmdlylkmkpvwrsscpak
ecpeslcqysfnsqrfaellstkfkyryegkitnyfhktlahvpeiierdgsigawaseg
nqsgnklfrrfrkmnarqskcyemedvlkhhwlytskylqkfmnahnalkssgftmnske
tlgdplgiedslesqdsmef

    Sequence, based on observed residues (ATOM records):
    >6oesC (C:)
glqpavclairvntflscsqyhkmyrtvkaitgrqifqplhalrnaekvllpgyhpfewq
pplknvssrtdvgiidglsglassvdeypvdtiakrfrydsalvsalmdmeedilegmrs
qdlddylngpftvvvkescdgmgdvsekhgsgpavpekavrfsftvmritiehgsqnvkv
feepkpnselcckplclmladesdhetltailspliaereamksseltlemggiprtfkf
ifrgtgydeklvrevegleasgsvyictlcdttrleasqnlvfhsitrshaenlqryevw
rsnpyhesveelrdrvkgvsakpfietvpsidalhcdignaaefykifqleigevykhpn
askeerkrwqatldkhlrkrmnlkpimrmngnfarklmtqetvdavcelipseerhealr
elmdlylkmkpvwrsscpakecpeslcqysfnsqrfaellstkfkyryegkitnyfhktl
ahvpeiierdgsigawasegnqsgnklfrrfrkmnarqskcyemedvlkhhwlytskylq
kfmnahn

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6oesD (D:)
mslqmvtvghnialiqpgfslmnfdgqvfffgqkgwpkrscptgvfhfdikqnhlklkpa
ifskdscylpplrypatcsykgsidsdkhqyiihggktpnnelsdkiyimsvacknnkkv
tfrctekdlvgdvpepryghsidvvysrgksmgvlfggrsympstqrttekwnsvadclp
hvflidfefgcatsyilpelqdglsfhvsiarndtvyilgghslasnirpanlyrirvdl
plgtpavnctvlpggisvssailtqtnndefvivggyqlenqkrmvcslvslgdntieis
emetpdwtsdikhskiwfgsnmgngtiflgipgdnkqamseafyfytlrcseedlsedqk
ivsnsqtstedpgdstpfedseefcfsaeatsfdgddefdtyneddeddesvtgywitcc
ptcdvdintwvpfystelnkpamiycshgdghwvhaqcmdleertlihlsegsnkyycne
hvqiaralqtpkrnpplqkppmkslhkkgsgkvltpakksflrrlfd

    Sequence, based on observed residues (ATOM records):
    >6oesD (D:)
mslqmvtvghnialiqpgfslmnfdgqvfffgqkgwpkrscptgvfhfdikqnhlklkpa
ifskdscylpplrypatcsykkhqyiihggktpnnelsdkiyimsvacknnkkvtfrcte
kdlvgdvpepryghsidvvysrgksmgvlfggrsympstqrttekwnsvadclphvflid
fefgcatsyilpelqdglsfhvsiarndtvyilgghslasnirpanlyrirvdlplgtpa
vnctvlpggisvssailtqtnndefvivggyqlenqkrmvcslvslgdntieisemetpd
wtsdikhskiwfgsnmgngtiflgipgdnkqamseafyfytlrcs

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.