PDB entry 6oeg

View 6oeg on RCSB PDB site
Description: structure of cagx from a cryo-em reconstruction of a t4ss
Deposited on 2019-03-27, released 2019-07-03
The last revision was dated 2020-10-07, with a file datestamp of 2020-10-02.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'N':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: Type IV secretion system apparatus protein CagX
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6oegN (N:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegN (N:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6oegO (O:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegO (O:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6oegP (P:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegP (P:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6oegQ (Q:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegQ (Q:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6oegR (R:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegR (R:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6oegS (S:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegS (S:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6oegT (T:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegT (T:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6oegU (U:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegU (U:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6oegV (V:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegV (V:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'W':
    Sequence, based on SEQRES records:
    >6oegW (W:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegW (W:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6oegX (X:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegX (X:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >6oegY (Y:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegY (Y:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >6oegZ (Z:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oegZ (Z:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6oega (a:)
mgqaffkkivgcfclgylflssaieaaaldiknfnrgrvkvvnkkiaylgdekpitiwts
ldnvtviqlekdetisyittgfnkgwsivpnsnhifiqpksvksnlmfekeavnfalmtr
dyqeflktkklivdapdpkeleeqkkalekekeakeqaqkaqkdkrekrkeeraknranl
enltnamsnpqnlsnnknlsefikqqreneldqmerledmqeqaqanalkqieelnkkqa
eetikqrakdkiniktdkpqkspednsielspsdsawrtnlvvrtnkalyqfilriaqkd
nfasayltvkleypqrhevssvieeelkkreeakrqkelikqenlnttayinrvmmasne
qiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqapekrskhimpseif
ddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyrvneiaekfklik
dkalvtvinkgygknpltknyniknygelervikklplvrdk

    Sequence, based on observed residues (ATOM records):
    >6oega (a:)
ayinrvmmasneqiinkekireekqkiildqakaletqyvhnalkrnpvprnynyyqape
krskhimpseifddgtftyfgfknitlqpaifvvqpdgklsmtdaaidpnmtnsglrwyr
vneiaekfklikdkalvtvinkgygknpltknyniknygele