PDB entry 6oee

View 6oee on RCSB PDB site
Description: structure of cagt from a cryo-em reconstruction of a t4ss
Deposited on 2019-03-27, released 2019-07-03
The last revision was dated 2020-10-07, with a file datestamp of 2020-10-02.
Experiment type: EM
Resolution: 3.8 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Type IV secretion system apparatus protein CagT
    Species: Helicobacter pylori [TaxId:210]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6oeeA (A:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeA (A:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6oeeB (B:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeB (B:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6oeeC (C:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeC (C:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6oeeD (D:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeD (D:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6oeeE (E:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeE (E:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6oeeF (F:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeF (F:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6oeeG (G:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeG (G:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6oeeH (H:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeH (H:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6oeeI (I:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeI (I:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6oeeJ (J:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeJ (J:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6oeeK (K:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeK (K:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6oeeL (L:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeL (L:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6oeeM (M:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeM (M:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6oeeN (N:)
mklrasvligatilclilsacsnyakkvvkqknhvytpvyneliekyseiplndklkdtp
fmvqvklpnykdylldnkqvvltfklvhhskkitligdankilqyknyfqangarsdidf
ylqptlnqkgvvmiasnyndnpnskekpqtfdvlqgsqpmlgantknlhgydvsgannkq
vinevarekaqlekinqyyktllqdkeqeyttrknnqreiletlsnragyqmrqnvisse
ifkngnlnmqakeeevreklqeereneylrnqirsllsgk

    Sequence, based on observed residues (ATOM records):
    >6oeeN (N:)
kkvvkqknhvytpvyneliekyseiplndklkdtpfmvqvklpnykdylldnkqvvltfk
lvhhskkitligdankilqyknyfqangarsdidfylqptlnqkgvvmiasnyndnpnsk
ekpqtfdvlqgsqpmlgantknlhgydvsgannkqvinevarekaqlekinqyyktllqd
keqeyttrknnqreiletlsnragyqmrqnvisseifkngnlnmqakeeevreklqeere
ney