PDB entry 6oe7

View 6oe7 on RCSB PDB site
Description: crystal structure of hmces cross-linked to dna abasic site
Deposited on 2019-03-27, released 2019-04-24
The last revision was dated 2019-07-17, with a file datestamp of 2019-07-12.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein
    Species: Homo sapiens [TaxId:9606]
    Gene: HMCES, C3orf37, DC12, SRAPD1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA (5'-d(*cp*cp*ap*gp*ap*cp*gp*tp*(drz)p*gp*tp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: DNA (5'-d(*gp*tp*cp*tp*gp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: UNX, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6oe7A (A:)
cgrtschlprdvltracayqdrrgqqrlpewrdpdkycpsynkspqsnspvllsrlhfek
dadsseriiapmrwglvpswfkesdpsklqfnttncrsdtvmekrsfkvplgkgrrcvvl
adgfyewqrcqgtnqrqpyfiyfpqikteksgsigaadspenwekvwdnwrlltmagifd
cweppeggdvlysytiitvdsckglsdihhrmpaildgeeavskwldfgevstqealkli
hptenitfhavssvvnnsrnntpeclapvaenlyfq

    Sequence, based on observed residues (ATOM records):
    >6oe7A (A:)
cgrtschlprdvltracayqdrrgqqrlpewrdpdkycpsynkspqsnspvllsrlhfek
dadsseriiapmrwglvpswfkesdpsklqfnttncrsdtvmekrsfkvplgkgrrcvvl
adgfyewqrcqgtnqrqpyfiyfpqikspenwekvwdnwrlltmagifdcweppeggdvl
ysytiitvdsckglsdihhrmpaildgeeavskwldfgevstqealklihptenitfhav
ssvvnnsrnntpeclapv

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.