PDB entry 6odl

View 6odl on RCSB PDB site
Description: Crystal structure of GluN2A agonist binding domain with 4-butyl-(S)-CCG-IV
Class: transport protein
Keywords: nmda receptor, antagonist, transport protein, receptor
Deposited on 2019-03-26, released 2020-04-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-24, with a file datestamp of 2021-02-19.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grin2a
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00959 (Start-135)
      • linker (136-137)
    • Uniprot G3V9C5 (138-278)
    Domains in SCOPe 2.08: d6odla_
  • Chain 'B':
    Compound: Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Grin2a
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00959 (0-135)
      • linker (136-137)
    • Uniprot G3V9C5 (138-278)
    Domains in SCOPe 2.08: d6odlb_
  • Heterogens: M7V, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6odlA (A:)
    nhlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfcidi
    lkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersevvd
    fsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypymh
    qymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifattgyg
    ialqkgspwkrqidlallqfvgdgemeeletlwltgich
    

    Sequence, based on observed residues (ATOM records): (download)
    >6odlA (A:)
    hlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfcidil
    kklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersevvdf
    svpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypymhq
    ymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifattgygi
    alqkgspwkrqidlallqfvgdgemeeletlwltgich
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6odlB (B:)
    nhlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfcidi
    lkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersevvd
    fsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypymh
    qymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifattgyg
    ialqkgspwkrqidlallqfvgdgemeeletlwltgich