PDB entry 6odl
View 6odl on RCSB PDB site
Description: Crystal structure of GluN2A agonist binding domain with 4-butyl-(S)-CCG-IV
Class: transport protein
Keywords: nmda receptor, antagonist, transport protein, receptor
Deposited on
2019-03-26, released
2020-04-01
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-02-24, with a file datestamp of
2021-02-19.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A
Species: Rattus norvegicus [TaxId:10116]
Gene: Grin2a
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6odla_ - Chain 'B':
Compound: Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A
Species: Rattus norvegicus [TaxId:10116]
Gene: Grin2a
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6odlb_ - Heterogens: M7V, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6odlA (A:)
nhlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfcidi
lkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersevvd
fsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypymh
qymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifattgyg
ialqkgspwkrqidlallqfvgdgemeeletlwltgich
Sequence, based on observed residues (ATOM records): (download)
>6odlA (A:)
hlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfcidil
kklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersevvdf
svpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypymhq
ymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifattgygi
alqkgspwkrqidlallqfvgdgemeeletlwltgich
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>6odlB (B:)
nhlsivtleeapfvivedidpltetcvrntvpcrkfvkinnstnegmnvkkcckgfcidi
lkklsrtvkftydlylvtngkhgkkvnnvwngmigevvyqravmavgsltineersevvd
fsvpfvetgisvmvsrgtqvtglsdkkfqrphdysppfrfgtvpngsternirnnypymh
qymtrfnqrgvedalvslktgkldafiydaavlnykagrdegcklvtigsgyifattgyg
ialqkgspwkrqidlallqfvgdgemeeletlwltgich