PDB entry 6od3

View 6od3 on RCSB PDB site
Description: human tcf4 c-terminal bhlh domain in complex with 13-bp oligonucleotide containing e-box sequence
Deposited on 2019-03-25, released 2019-05-29
The last revision was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 1.49 Å
R-factor: N/A
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcription factor 4
    Species: Homo sapiens [TaxId:9606]
    Gene: TCF4, BHLHB19, ITF2, SEF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15884 (2-61)
      • expression tag (0-1)
  • Chain 'B':
    Compound: Transcription factor 4
    Species: Homo sapiens [TaxId:9606]
    Gene: TCF4, BHLHB19, ITF2, SEF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15884 (2-End)
      • expression tag (0-1)
  • Chain 'E':
    Compound: Transcription factor 4
    Species: Homo sapiens [TaxId:9606]
    Gene: TCF4, BHLHB19, ITF2, SEF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15884 (2-61)
      • expression tag (0-1)
  • Chain 'F':
    Compound: Transcription factor 4
    Species: Homo sapiens [TaxId:9606]
    Gene: TCF4, BHLHB19, ITF2, SEF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15884 (2-End)
      • expression tag (1)
  • Chain 'G':
    Compound: Transcription factor 4
    Species: Homo sapiens [TaxId:9606]
    Gene: TCF4, BHLHB19, ITF2, SEF2
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Transcription factor 4
    Species: Homo sapiens [TaxId:9606]
    Gene: TCF4, BHLHB19, ITF2, SEF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15884 (2-61)
      • expression tag (1)
  • Chain 'I':
    Compound: Transcription factor 4
    Species: Homo sapiens [TaxId:9606]
    Gene: TCF4, BHLHB19, ITF2, SEF2
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Transcription factor 4
    Species: Homo sapiens [TaxId:9606]
    Gene: TCF4, BHLHB19, ITF2, SEF2
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: DNA (5'-d(*cp*ap*tp*ap*cp*ap*cp*gp*tp*gp*tp*ap*t)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'X':
    Compound: DNA (5'-d(*cp*ap*tp*ap*cp*ap*cp*gp*tp*gp*tp*ap*t)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'Y':
    Compound: DNA (5'-d(*cp*ap*tp*ap*cp*ap*cp*gp*tp*gp*tp*ap*t)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'Z':
    Compound: DNA (5'-d(*cp*ap*tp*ap*cp*ap*cp*gp*tp*gp*tp*ap*t)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Heterogens: EDO, CL, PG4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6od3A (A:)
hmrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvr
er

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6od3B (B:)
hmrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvr
er

    Sequence, based on observed residues (ATOM records):
    >6od3B (B:)
hmrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvr
e

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6od3E (E:)
hmrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvr
er

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6od3F (F:)
hmrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvr
er

    Sequence, based on observed residues (ATOM records):
    >6od3F (F:)
mrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvre

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6od3G (G:)
hmrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvr
er

    Sequence, based on observed residues (ATOM records):
    >6od3G (G:)
narerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvrer

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6od3H (H:)
hmrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvr
er

    Sequence, based on observed residues (ATOM records):
    >6od3H (H:)
mrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvre
r

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6od3I (I:)
hmrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvr
er

    Sequence, based on observed residues (ATOM records):
    >6od3I (I:)
rmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvrer

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6od3J (J:)
hmrrmannarerlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvr
er

    Sequence, based on observed residues (ATOM records):
    >6od3J (J:)
erlrvrdineafkelgrmvqlhlksdkpqtkllilhqavavilsleqqvrer

  • Chain 'W':
    No sequence available.

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.

  • Chain 'Z':
    No sequence available.