PDB entry 6ocb

View 6ocb on RCSB PDB site
Description: Crystal structure of FluA-20 Fab in complex with the head domain of H3 (A/Hong Kong/1/1968)
Class: immune system
Keywords: anti-flu antibody, HA head domain, IMMUNE SYSTEM
Deposited on 2019-03-22, released 2019-05-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-12-09, with a file datestamp of 2020-12-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:506350]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ocba_
  • Chain 'H':
    Compound: Heavy chain of FluA-20 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OCB (0-End)
    Domains in SCOPe 2.08: d6ocbh_
  • Chain 'L':
    Compound: Light chain of FluA-20 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OCB (0-End)
    Domains in SCOPe 2.08: d6ocbl1, d6ocbl2
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ocbA (A:)
vqssstgkicnnphrildgidctlidallgdphcdvfqnetwdlfverskafsncypydv
pdyaslrslvassgtlefitegftwtgvtqnggsnackrgpgsgffsrlnwltksgstyp
vlnvtmpnndnfdklyiwgvhhpstnqeqtslyvqasgrvtvstrrsqqtiipnigsrpw
vrglssrisiywtivkpgdvlvinsngnliaprgyfkmrtgkssimrsdapidtciseci
tpngsipndkpfqnvnkitygacpkyvghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6ocbA (A:)
vqssstgkicnnphrildgidctlidallgdphcdvfqnetwdlfverskafsncypydv
pdyaslrslvassgtlefitegftwtgvtqnggsnackrgpgsgffsrlnwltksgstyp
vlnvtmpnndnfdklyiwgvhhpstnqeqtslyvqasgrvtvstrrsqqtiipnigsrpw
vrglssrisiywtivkpgdvlvinsngnliaprgyfkmrtgkssimrsdapidtciseci
tpngsipndkpfqnvnkitygacpkyv

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6ocbH (H:)
qvqleesgpglvkpsetlsltcsvsgvsvtsdiyywtwirqppgkglewigyifyngdtn
ynpslksrvtmsidtsknefslrltsvtaadtavyfcargtedlgycssgscpnhwgqgt
lvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfp
avlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkschhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6ocbH (H:)
qvqleesgpglvkpsetlsltcsvsgvsvtsdiyywtwirqppgkglewigyifyngdtn
ynpslksrvtmsidtsknefslrltsvtaadtavyfcargtedlgycssgscpnhwgqgt
lvtvssastkgpsvfplapsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6ocbL (L:)
divmtqspsslsasigdrvtitcrpsqnirsflnwfqhkpgkapklliyaasnlqsgvps
rfsgsgsgteftltirslqpedfatyycqqsyntpptfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >6ocbL (L:)
divmtqspsslsasigdrvtitcrpsqnirsflnwfqhkpgkapklliyaasnlqsgvps
rfsgsgsgteftltirslqpedfatyycqqsyntpptfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrge