PDB entry 6obj

View 6obj on RCSB PDB site
Description: structure of a dna-bound dimer extracted from filamentous sgrai endonuclease in its activated form
Deposited on 2019-03-20, released 2020-02-26
The last revision was dated 2020-09-09, with a file datestamp of 2020-09-04.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SgraIR restriction enzyme
    Species: Streptomyces griseus [TaxId:1911]
    Gene: sgraIR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F6L0 (Start-338)
      • engineered mutation (62)
  • Chain 'B':
    Compound: SgraIR restriction enzyme
    Species: Streptomyces griseus [TaxId:1911]
    Gene: sgraIR
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9F6L0 (Start-338)
      • engineered mutation (62)
  • Chain 'C':
    Compound: DNA (26-mer)
    Species: STREPTOMYCES GRISEUS, synthetic [TaxId:1911]
  • Chain 'D':
    Compound: DNA (26-mer)
    Species: STREPTOMYCES GRISEUS, synthetic [TaxId:1911]
  • Heterogens: MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6objA (A:)
mpftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasagin
gmdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnsl
mvgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdgl
glptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislava
fkrslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslygla
egrsavhrairelyvpptaadlarrffaflnermelvng

    Sequence, based on observed residues (ATOM records):
    >6objA (A:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
grsavhrairelyvpptaadlarrffaflnermelvng

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6objB (B:)
mpftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasagin
gmdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnsl
mvgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdgl
glptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislava
fkrslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslygla
egrsavhrairelyvpptaadlarrffaflnermelvng

    Sequence, based on observed residues (ATOM records):
    >6objB (B:)
pftysieatrnlatterciqdirnapvrnrstqfqlaqqnmlaytfgevipgfasaging
mdyrdvigrpvenavtegthffrddfrvdsnakakvagdifeivssavmwncaarwnslm
vgegwrsqprysrptlspsprrqvavlnlprsfdwvsllvpesqevieefraglrkdglg
lptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavaf
krslrsdrlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglae
grsavhrairelyvpptaadlarrffaflnermelvng

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.