PDB entry 6obg

View 6obg on RCSB PDB site
Description: Ricin A chain bound to VHH antibody V8E6
Class: toxin
Keywords: Toxin
Deposited on 2019-03-20, released 2020-04-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-10-14, with a file datestamp of 2020-10-09.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ricin a chain
    Species: Ricinus communis [TaxId:3988]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6obga_
  • Chain 'B':
    Compound: ricin a chain
    Species: Ricinus communis [TaxId:3988]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6obgb_
  • Chain 'C':
    Compound: VHH antibody V8E6
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OBG (0-116)
    Domains in SCOPe 2.08: d6obgc_
  • Chain 'D':
    Compound: VHH antibody V8E6
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6OBG (0-116)
    Domains in SCOPe 2.08: d6obgd_
  • Heterogens: ZN, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6obgA (A:)
qypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfilvelsn
haelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafggnyd
rleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaarfqyi
egemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskfsvyd
vsilipiialmvyrcap

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6obgB (B:)
qypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfilvelsn
haelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafggnyd
rleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaarfqyi
egemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskfsvyd
vsilipiialmvyrcap

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6obgC (C:)
qlvetggglvqpggslrlscaasgsifsinamgwyrqapgkerelvadisssgrineads
vkgrftisrdnakntvylqmnslkpedtavyycnvlagshyydeyeywgqgtqvtvs

    Sequence, based on observed residues (ATOM records): (download) 
    >6obgC (C:)
qlvetggglvqpggslrlscaasgsifsinamgwyrqapgerelvadisssgrineadsv
kgrftisrdnakntvylqmnslkpedtavyycnvlagshyydeyeywgqgtqvtvs

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6obgD (D:)
qlvetggglvqpggslrlscaasgsifsinamgwyrqapgkerelvadisssgrineads
vkgrftisrdnakntvylqmnslkpedtavyycnvlagshyydeyeywgqgtqvtvs

    Sequence, based on observed residues (ATOM records): (download) 
    >6obgD (D:)
qlvetggglvqpggslrlscaasgsifsinamgwyrqapkerelvadisssgrineadsv
kgrftisrdnakntvylqmnslkpedtavyycnvlagshyydeyeywgqgtqvtvs