PDB entry 6oai

View 6oai on RCSB PDB site
Description: Crystal structure of P[6] rotavirus vp8* complexed with LNFPI
Class: virus
Keywords: Rotavirus, host receptor interaction, VIRUS
Deposited on 2019-03-16, released 2020-03-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-04-08, with a file datestamp of 2020-04-03.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protease-sensitive outer capsid protein
    Species: Human rotavirus A [TaxId:10941]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6oaia_
  • Chain 'B':
    Compound: Protease-sensitive outer capsid protein
    Species: Human rotavirus A [TaxId:10941]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6oaib_
  • Chain 'C':
    Compound: Protease-sensitive outer capsid protein
    Species: Human rotavirus A [TaxId:10941]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6oaic_
  • Chain 'D':
    Compound: Protease-sensitive outer capsid protein
    Species: Human rotavirus A [TaxId:10941]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6oaid_
  • Heterogens: M2J, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6oaiA (A:)
    ldgpyqptnfkppndywillnptnqqvvlegtnktdiwvalllvepnvtnqsrqytlfge
    tkqitvenntnkwkffemfrsnvsaefqhkrtltsdtklagfmkfynsvwtfhgetphat
    tdysstsnlsevetvihvefyiiprsqeskcseyintgl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6oaiB (B:)
    ldgpyqptnfkppndywillnptnqqvvlegtnktdiwvalllvepnvtnqsrqytlfge
    tkqitvenntnkwkffemfrsnvsaefqhkrtltsdtklagfmkfynsvwtfhgetphat
    tdysstsnlsevetvihvefyiiprsqeskcseyintgl
    

    Sequence, based on observed residues (ATOM records): (download)
    >6oaiB (B:)
    ldgpyqptnfkppndywillnptnqqvvlegtnktdiwvalllvepnvtnqsrqytlfge
    tkqitvenntnkwkffemfrsnvsaefqhkrtltsdtklagfmkfynsvwtfhgetphat
    tdysstsnlsevetvihvefyiiprsqeskcseyintg
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >6oaiC (C:)
    ldgpyqptnfkppndywillnptnqqvvlegtnktdiwvalllvepnvtnqsrqytlfge
    tkqitvenntnkwkffemfrsnvsaefqhkrtltsdtklagfmkfynsvwtfhgetphat
    tdysstsnlsevetvihvefyiiprsqeskcseyintgl
    

    Sequence, based on observed residues (ATOM records): (download)
    >6oaiC (C:)
    ldgpyqptnfkppndywillnptnqqvvlegtnktdiwvalllvepnvtnqsrqytlfge
    tkqitvenntnkwkffemfrsnvsaefqhkrtltsdtklagfmkfynsvwtfhgetphat
    tdysstsnlsevetvihvefyiiprsqeskcseyintg
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >6oaiD (D:)
    ldgpyqptnfkppndywillnptnqqvvlegtnktdiwvalllvepnvtnqsrqytlfge
    tkqitvenntnkwkffemfrsnvsaefqhkrtltsdtklagfmkfynsvwtfhgetphat
    tdysstsnlsevetvihvefyiiprsqeskcseyintgl
    

    Sequence, based on observed residues (ATOM records): (download)
    >6oaiD (D:)
    ldgpyqptnfkppndywillnptnqqvvlegtnktdiwvalllvepnvtnqsrqytlfge
    tkqitvenntnkwkffemfrsnvsaefqhkrtltsdtklagfmkfynsvwtfhgetphat
    tdysstsnlsevetvihvefyiiprsqeskcseyintg