PDB entry 6o8g

View 6o8g on RCSB PDB site
Description: crystal structure of uvrb bound to fully duplex dna
Deposited on 2019-03-10, released 2020-01-22
The last revision was dated 2020-01-22, with a file datestamp of 2020-01-17.
Experiment type: XRAY
Resolution: 2.64 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: UvrABC system protein B
    Species: Bacillus caldotenax [TaxId:1395]
    Gene: uvrB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56981
      • conflict (90)
      • conflict (143)
      • insertion (189)
      • conflict (210)
      • conflict (232)
      • conflict (302)
  • Chain 'B':
    Compound: UvrABC system protein B
    Species: Bacillus caldotenax [TaxId:1395]
    Gene: uvrB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56981
      • conflict (90)
      • conflict (143)
      • insertion (189)
      • conflict (210)
      • conflict (232)
      • conflict (302)
  • Chain 'C':
    Compound: UvrABC system protein B
    Species: Bacillus caldotenax [TaxId:1395]
    Gene: uvrB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56981
      • conflict (90)
      • conflict (143)
      • insertion (189)
      • conflict (210)
      • conflict (232)
      • conflict (302)
  • Chain 'D':
    Compound: DNA (5'-d(*tp*cp*tp*cp*cp*ap*tp*cp*gp*cp*gp*cp*tp*ap*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'E':
    Compound: DNA (5'-d(*gp*gp*tp*ap*gp*cp*gp*cp*gp*ap*tp*gp*gp*ap*gp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(*tp*cp*tp*cp*cp*ap*tp*cp*gp*cp*gp*cp*tp*ap*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: DNA (5'-d(*gp*gp*tp*ap*gp*cp*gp*cp*gp*ap*tp*gp*gp*ap*gp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: DNA (5'-d(*tp*cp*tp*cp*cp*ap*tp*cp*gp*cp*gp*cp*tp*ap*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'I':
    Compound: DNA (5'-d(*gp*gp*tp*ap*gp*cp*gp*cp*gp*ap*tp*gp*gp*ap*gp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: ADP, CL, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6o8gA (A:)
vegrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkpt
lviahnktlagqlyselkeffphnaveyfvcyydyyqpeayvpqtdtyiekdakindeid
klrhsatsalferrdviivasvssiyglgspeeyrelvvslrvgmeiernallrrlvdiq
ydrndidfrrgtfrvrgdvveifpasrdehsirveffgdeierirevdaltgevlgereh
vaifpashfvtreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmrem
gfssgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqv
lvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldp
tidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseik
tlerieiirdlrlgkydvlvginllregldipevslvaildadkegflrsersliqtigr
aarnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeir

    Sequence, based on observed residues (ATOM records):
    >6o8gA (A:)
egrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkptl
viahnktlagqlyselkeffphnaveyfvcyydyykindeidklrhsatsalferrdvii
vasvssiyglgspeeyrelvvslrvgmeiernallrrlvdiqydrndidfrrgtfrvrgd
vveifpasrdehsirveffgdeierirevdaltgevlgerehvaifpashfvtreekmrl
aiqnieqeleerlaelraqgklleaqrleqrtrydlemmremgfssgienysrhlalrpp
gstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqvlvdhgfrlpsaldnrplt
feefeqkinqiiyvsatpgpyelehspgvveqiirptglldptidvrptkgqiddligei
rervernertlvttltkkmaedltdylkeagikvaylhseiktlerieiirdlrlgkydv
lvginllregldipevslvaildadkegflrsersliqtigraarnanghvimyadtitk
smeiaiqetkrrraiqeeynrkhg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6o8gB (B:)
vegrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkpt
lviahnktlagqlyselkeffphnaveyfvcyydyyqpeayvpqtdtyiekdakindeid
klrhsatsalferrdviivasvssiyglgspeeyrelvvslrvgmeiernallrrlvdiq
ydrndidfrrgtfrvrgdvveifpasrdehsirveffgdeierirevdaltgevlgereh
vaifpashfvtreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmrem
gfssgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqv
lvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldp
tidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseik
tlerieiirdlrlgkydvlvginllregldipevslvaildadkegflrsersliqtigr
aarnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeir

    Sequence, based on observed residues (ATOM records):
    >6o8gB (B:)
grfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkptlv
iahnktlagqlyselkeffphnaveyfvcyyindeidklrhsatsalferrdviivasvs
siyglgspeeyrelvvslrvgmeiernallrrlvdiqydrndidfrrgtfrvrgdvveif
pasrdehsirveffgdeierirevdaltgevlgerehvaifpashfvtreekmrlaiqni
eqeleerlaelraqgklleaqrleqrtrydlemmremgfssgienysrhlalrppgstpy
tlldyfpddfliivdeshvtlpqlrgmyngdrarkqvlvdhgfrlpsaldnrpltfeefe
qkinqiiyvsatpgpyelehspgvveqiirptglldptidvrptkgqiddligeirerve
rnertlvttltkkmaedltdylkeagikvaylhseiktlerieiirdlrlgkydvlvgin
llregldipevslvaildadkegflrsersliqtigraarnanghvimyadtitksmeia
iqetkrrraiqeeynrkhgivprtvkke

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6o8gC (C:)
vegrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkpt
lviahnktlagqlyselkeffphnaveyfvcyydyyqpeayvpqtdtyiekdakindeid
klrhsatsalferrdviivasvssiyglgspeeyrelvvslrvgmeiernallrrlvdiq
ydrndidfrrgtfrvrgdvveifpasrdehsirveffgdeierirevdaltgevlgereh
vaifpashfvtreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmrem
gfssgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqv
lvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldp
tidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseik
tlerieiirdlrlgkydvlvginllregldipevslvaildadkegflrsersliqtigr
aarnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeir

    Sequence, based on observed residues (ATOM records):
    >6o8gC (C:)
grfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkptlv
iahnktlagqlyselkeffphnaveyfvcyydykindeidklrhsatsalferrdviiva
svssiyglgspeeyrelvvslrvgmeiernallrrlvdiqydrndidfrrgtfrvrgdvv
eifpasrdehsirveffgdeierirevdaltgevlgerehvaifpashfvtreekmrlai
qnieqeleerlaelraqgklleaqrleqrtrydlemmssgienysrhlalrppgstpytl
ldyfpddfliivdeshvtlpqlrgmyngdrarkqvlvdhgfrlpsaldnrpltfeefeqk
inqiiyvsatpgpyelehspgvveqiirptglldptidvrptkgqiddligeirervern
ertlvttltkkmaedltdylkeagikvaylhseiktlerieiirdlrlgkydvlvginll
regldipevslvaildadkegflrsersliqtigraarnanghvimyadtitksmeiaiq
etkrrraiqeeynrkhgivp

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.