PDB entry 6o8e

View 6o8e on RCSB PDB site
Description: crystal structure of uvrb bound to duplex dna with adp
Deposited on 2019-03-10, released 2020-01-22
The last revision was dated 2020-01-22, with a file datestamp of 2020-01-17.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: UvrABC system protein B
    Species: Bacillus caldotenax [TaxId:1395]
    Gene: uvrB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56981 (Start-592)
      • conflict (143)
      • insertion (189)
      • conflict (210)
      • conflict (232)
      • conflict (250)
      • conflict (302)
  • Chain 'B':
    Compound: UvrABC system protein B
    Species: Bacillus caldotenax [TaxId:1395]
    Gene: uvrB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56981
      • conflict (143)
      • insertion (189)
      • conflict (210)
      • conflict (232)
      • conflict (250)
      • conflict (302)
  • Chain 'C':
    Compound: DNA (5'-d(*gp*cp*tp*cp*tp*ap*gp*ap*tp*tp*tp*tp*cp*ap*tp*ap*cp*gp*gp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA (5'-d(*gp*cp*cp*gp*tp*ap*tp*gp*cp*cp*ap*ap*tp*cp*tp*ap*gp*ap*gp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'E':
    Compound: DNA (5'-d(*gp*cp*tp*cp*tp*ap*gp*ap*tp*tp*tp*tp*cp*ap*tp*ap*cp*gp*gp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(*gp*cp*cp*gp*tp*ap*tp*gp*cp*cp*ap*ap*tp*cp*tp*ap*gp*ap*gp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: ADP, PO4, MG, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6o8eA (A:)
vegrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkpt
lviahnktlagqlyselkeffphnaveyfvsyydyyqpeayvpqtdtyiekdakindeid
klrhsatsalferrdviivasvssiyglgspeeyrelvvslrvgmeiernallrrlvdiq
ydrndidfrrgtfrvrgdvveifpasrdehsirveffgdeierirevdaltgevlgereh
vaifpashfvcreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmrem
gfssgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqv
lvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldp
tidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseik
tlerieiirdlrlgkydvlvginllregldipevslvaildadkegflrsersliqtigr
aarnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeir

    Sequence, based on observed residues (ATOM records):
    >6o8eA (A:)
egrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkptl
viahnktlagqlyselkeffphnaveyfvsyydyyqpeayvpqtdtyiekdakindeidk
lrhsatsalferrdviivasvssiyglgspeeyrelvvslrvgmeiernallrrlvdiqy
drndidfrrgtfrvrgdvveifpasrdehsirveffgdeierirevdaltgevlgerehv
aifpashfvcreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmremg
fssgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqvl
vdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldpt
idvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseikt
lerieiirdlrlgkydvlvginllregldipevslvaildadkegflrsersliqtigra
arnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeir

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6o8eB (B:)
vegrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkpt
lviahnktlagqlyselkeffphnaveyfvsyydyyqpeayvpqtdtyiekdakindeid
klrhsatsalferrdviivasvssiyglgspeeyrelvvslrvgmeiernallrrlvdiq
ydrndidfrrgtfrvrgdvveifpasrdehsirveffgdeierirevdaltgevlgereh
vaifpashfvcreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmrem
gfssgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqv
lvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldp
tidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseik
tlerieiirdlrlgkydvlvginllregldipevslvaildadkegflrsersliqtigr
aarnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeir

    Sequence, based on observed residues (ATOM records):
    >6o8eB (B:)
grfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkptlv
iahnktlagqlyselkeffphnaveyfvsyydyyqpeayvpqtdtyiekdakindeidkl
rhsatsalferrdviivasvssiyglgspeeyrelvvslrvgmeiernallrrlvdiqyd
rndidfrrgtfrvrgdvveifpasrdehsirveffgdeierirevdaltgevlgerehva
ifpashfvcreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmremgf
ssgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqvlv
dhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldpti
dvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseiktl
erieiirdlrlgkydvlvginllregldipevslvaildadkegflrsersliqtigraa
rnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkei

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.