PDB entry 6o7u

View 6o7u on RCSB PDB site
Description: Saccharomyces cerevisiae V-ATPase Stv1-VO
Class: membrane protein
Keywords: Proton pump, MEMBRANE PROTEIN
Deposited on 2019-03-08, released 2019-04-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'a':
    Compound: V-type proton ATPase subunit a, Golgi isoform
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: V0 assembly protein 1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: V-type proton ATPase subunit c''
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: V-type proton ATPase subunit D
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o7ud_
  • Chain 'e':
    Compound: V-type proton ATPase subunit E
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Putative protein YPR170W-B
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'g':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o7ug1, d6o7ug2
  • Chain 'h':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o7uh1, d6o7uh2
  • Chain 'i':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o7ui1, d6o7ui2
  • Chain 'j':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o7uj1, d6o7uj2
  • Chain 'k':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o7uk1, d6o7uk2
  • Chain 'l':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o7ul1, d6o7ul2
  • Chain 'm':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o7um1, d6o7um2
  • Chain 'n':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o7un1, d6o7un2
  • Chain 'o':
    Compound: V-type proton ATPase subunit c'
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o7uo1, d6o7uo2

PDB Chain Sequences:

  • Chain 'a':
    No sequence available.

  • Chain 'b':
    No sequence available.

  • Chain 'c':
    No sequence available.

  • Chain 'd':
    Sequence, based on SEQRES records: (download)
    >6o7ud (d:)
    megvyfnidngfiegvvrgyrngllsnnqyinltqcdtledlklqlsstdygnflssvss
    eslttsliqeyassklyhefnyirdqssgstrkfmdyitygymidnvalmitgtihdrdk
    geilqrchplgwfdtlptlsvatdleslyetvlvdtplapyfkncfdtaeelddmnieii
    rnklykayledfynfvteeipepakecmqtllgfeadrrsinialnslqssdidpdlksd
    llpnigklyplatfhlaqaqdfegvraalanvyeyrgfletgnledhfyqlemelcrdaf
    tqqfaistvwawmkskeqevrnitwiaeciaqnqrerinnyisvy
    

    Sequence, based on observed residues (ATOM records): (download)
    >6o7ud (d:)
    gvyfnidngfiegvvrgyrngllsnnqyinltqcdtledlklqlsstdygnflssvsses
    lttsliqeyassklyhefnyirdqssgstrkfmdyitygymidnvalmitgtihdrdkge
    ilqrchplgwfdtlptlsvatdleslyetvlvdtplapyfkncfdtaeelddmnieiirn
    klykayledfynfvteeipepakecmqtllgfeadrrsinialnslqssdidpdlksdll
    pnigklyplatfhlaqaqdfegvraalanvyeyrgfletgnledhfyqlemelcrdaftq
    qfaistvwawmkskeqevrnitwiaeciaqnqrerinnyisvy
    

  • Chain 'e':
    No sequence available.

  • Chain 'f':
    No sequence available.

  • Chain 'g':
    Sequence, based on SEQRES records: (download)
    >6o7ug (g:)
    mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
    giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
    qqprlfvgmililifaevlglyglivalllnsratqdvvc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6o7ug (g:)
    lcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimagii
    aiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssqqp
    rlfvgmililifaevlglyglivalllnsratq
    

  • Chain 'h':
    Sequence, based on SEQRES records: (download)
    >6o7uh (h:)
    mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
    giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
    qqprlfvgmililifaevlglyglivalllnsratqdvvc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6o7uh (h:)
    elcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimagi
    iaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssqq
    prlfvgmililifaevlglyglivalllnsratqdvv
    

  • Chain 'i':
    Sequence, based on SEQRES records: (download)
    >6o7ui (i:)
    mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
    giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
    qqprlfvgmililifaevlglyglivalllnsratqdvvc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6o7ui (i:)
    elcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimagi
    iaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssqq
    prlfvgmililifaevlglyglivalllnsratqdvv
    

  • Chain 'j':
    Sequence, based on SEQRES records: (download)
    >6o7uj (j:)
    mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
    giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
    qqprlfvgmililifaevlglyglivalllnsratqdvvc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6o7uj (j:)
    lcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimagii
    aiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssqqp
    rlfvgmililifaevlglyglivalllnsratqdvv
    

  • Chain 'k':
    Sequence, based on SEQRES records: (download)
    >6o7uk (k:)
    mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
    giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
    qqprlfvgmililifaevlglyglivalllnsratqdvvc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6o7uk (k:)
    telcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimag
    iiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssq
    qprlfvgmililifaevlglyglivalllnsratqdvv
    

  • Chain 'l':
    Sequence, based on SEQRES records: (download)
    >6o7ul (l:)
    mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
    giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
    qqprlfvgmililifaevlglyglivalllnsratqdvvc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6o7ul (l:)
    elcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimagi
    iaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssqq
    prlfvgmililifaevlglyglivalllnsratqdvv
    

  • Chain 'm':
    Sequence, based on SEQRES records: (download)
    >6o7um (m:)
    mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
    giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
    qqprlfvgmililifaevlglyglivalllnsratqdvvc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6o7um (m:)
    elcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimagi
    iaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssqq
    prlfvgmililifaevlglyglivalllnsratqdvvc
    

  • Chain 'n':
    Sequence, based on SEQRES records: (download)
    >6o7un (n:)
    mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
    giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
    qqprlfvgmililifaevlglyglivalllnsratqdvvc
    

    Sequence, based on observed residues (ATOM records): (download)
    >6o7un (n:)
    elcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimagi
    iaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssqq
    prlfvgmililifaevlglyglivalllnsratqdvvc
    

  • Chain 'o':
    Sequence, based on SEQRES records: (download)
    >6o7uo (o:)
    mstqlasniyaplyapffgfagcaaamvlsclgaaigtaksgigiagigtfkpelimksl
    ipvvmsgilaiyglvvavliagnlsptedytlfngfmhlscglcvgfaclssgyaigmvg
    dvgvrkymhqprlfvgivlilifsevlglygmivalilntrgse
    

    Sequence, based on observed residues (ATOM records): (download)
    >6o7uo (o:)
    niyaplyapffgfagcaaamvlsclgaaigtaksgigiagigtfkpelimkslipvvmsg
    ilaiyglvvavliagnlsptedytlfngfmhlscglcvgfaclssgyaigmvgdvgvrky
    mhqprlfvgivlilifsevlglygmivalilntrgs