PDB entry 6o7t

View 6o7t on RCSB PDB site
Description: saccharomyces cerevisiae v-atpase vph1-vo
Deposited on 2019-03-08, released 2019-04-03
The last revision was dated 2020-01-15, with a file datestamp of 2020-01-10.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'a':
    Compound: V-type proton ATPase subunit a, vacuolar isoform
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: V0 assembly protein 1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: V-type proton ATPase subunit c''
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: V-type proton ATPase subunit D
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: V-type proton ATPase subunit E
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Putative protein YPR170W-B
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'g':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'h':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'i':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'j':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'k':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'l':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'm':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'n':
    Compound: V-type proton ATPase subunit C
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'o':
    Compound: V-type proton ATPase subunit c'
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6o7ta (a:)
maekeeaifrsaemalvqfyipqeisrdsaytlgqlglvqfrdlnskvrafqrtfvneir
rldnverqyryfysllkkhdiklyegdtdkyldgsgelyvppsgsviddyvrnasyleer
liqmedatdqievqkndleqyrfilqsgdefflkgdntdstsymdedmidangeniaaai
gasvnyvtgviardkvatleqilwrvlrgnlffktveieqpvydvktreykhknafivfs
hgdliikrirkiaesldanlydvdssnegrsqqlakvnknlsdlytvlkttsttlesely
aiakeldswfqdvtrekaifeilnksnydtnrkiliaegwiprdelatlqarlgemiarl
gidvpsiiqvldtnhtpptfhrtnkftagfqsicdcygiaqyreinaglptivtfpfmfa
imfgdmghgflmtlaalslvlnekkinkmkrgeifdmaftgryiillmgvfsmytgflyn
difsktmtifksgwkwpdhwkkgesitatsvgtypigldwawhgtenallfsnsykmkls
ilmgfihmtysyffslanhlyfnsmidiignfipgllfmqgifgylsvcivykwavdwvk
dgkpapgllnmlinmflspgtiddelyphqakvqvflllmalvcipwlllvkplhfkfth
kkksheplpsteadassedleaqqlisamdaddaeeeevgsgshgedfgdimihqvihti
efclncvshtasylrlwalslahaqlssvlwtmtiqiafgfrgfvgvfmtvalfamwfal
tcavlvlmegtsamlhslrlhwvesmskffvgeglpyepfafeykdmevavasasssass
dykdhdgdykdhdidykddddk

    Sequence, based on observed residues (ATOM records):
    >6o7ta (a:)
keeaifrsaemalvqfyipqeisrdsaytlgqlglvqfrdlnskvrafqrtfvneirrld
nverqyryfysllkkhdiklyegdtdkyldgsgelyvppsgsviddyvrnasyleerliq
medatdqievqkndleqyrfilyvtgviardkvatleqilwrvlrgnlffktveieqpvy
dvktreykhknafivfshgdliikrirkiaesldanlydvdssnegrsqqlakvnknlsd
lytvlkttsttleselyaiakeldswfqdvtrekaifeilnksnydtnrkiliaegwipr
delatlqarlgemiarlgidvpsiiqvldtnhtpptfhrtnkftagfqsicdcygiaqyr
einaglptivtfpfmfaimfgdmghgflmtlaalslvlnekkinkmkrgeifdmaftgry
iillmgvfsmytgflyndifsktmtifksgwkwpdhwkkgesitatsvgtypigldwawh
gtenallfsnsykmklsilmgfihmtysyffslanhlyfnsmidiignfipgllfmqgif
gylsvcivykwavdwvkdgkpapgllnmlinmflspgtiddelyphqakvqvflllmalv
cipwlllvkplhgdimihqvihtiefclncvshtasylrlwalslahaqlssvlwtmtiq
iafgfrgfvgvfmtvalfamwfaltcavlvlmegtsamlhslrlhwvesmskffvgeglp
yepfafeykdmeva

  • Chain 'b':
    Sequence, based on SEQRES records:
    >6o7tb (b:)
mvfgqlyalfiftlsccisktvqadsskesssfisfdkesnwdtistisstadvissvds
aiavfefdnfslldnlmideeypffnrffandvsltvhddsplnisqslspimeqftvde
lpesasdllyeyslddksivlfkftsdaydlkkldefidsclsfledksgdnltvvinsl
gwafededgddeyateetlshhdnnkgkegdddilssiwtegllmclivsalllfiliva
lswisnlditygalekstnpikknn

    Sequence, based on observed residues (ATOM records):
    >6o7tb (b:)
ilssiwtegllmclivsalllfilivalswisnldity

  • Chain 'c':
    Sequence, based on SEQRES records:
    >6o7tc (c:)
mnkeskdddmslgkfsfshflyylvlivvivyglyklftghgsdinfgkfllrtspymwa
nlgialcvglsvvgaawgifitgssmigagvraprittknlisiifcevvaiygliiaiv
fsskltvataenmysksnlytgyslfwagitvgasnlicgiavgitgataaisdaadsal
fvkilvieifgsilgllglivgllmagkasefq

    Sequence, based on observed residues (ATOM records):
    >6o7tc (c:)
hflyylvlivvivyglyklftghgsdinfgkfllrtspymwanlgialcvglsvvgaawg
ifitgssmigagvraprittknlisiifcevvaiygliiaivfsskltvataenmysksn
lytgyslfwagitvgasnlicgiavgitgataaisdaadsalfvkilvieifgsilgllg
livgllmagkasefq

  • Chain 'd':
    Sequence, based on SEQRES records:
    >6o7td (d:)
megvyfnidngfiegvvrgyrngllsnnqyinltqcdtledlklqlsstdygnflssvss
eslttsliqeyassklyhefnyirdqssgstrkfmdyitygymidnvalmitgtihdrdk
geilqrchplgwfdtlptlsvatdleslyetvlvdtplapyfkncfdtaeelddmnieii
rnklykayledfynfvteeipepakecmqtllgfeadrrsinialnslqssdidpdlksd
llpnigklyplatfhlaqaqdfegvraalanvyeyrgfletgnledhfyqlemelcrdaf
tqqfaistvwawmkskeqevrnitwiaeciaqnqrerinnyisvy

    Sequence, based on observed residues (ATOM records):
    >6o7td (d:)
gvyfnidngfiegvvrgyrngllsnnqyinltqcdtledlklqlsstdygnflssvsses
lttsliqeyassklyhefnyirdqssgstrkfmdyitygymidnvalmitgtihdrdkge
ilqrchplgwfdtlptlsvatdleslyetvlvdtplapynieiirnklykayledfynfv
teeipepakecmqtllgfeadrrsinialnsllksdllpnigklyplatfhlaqaqdfeg
vraalanvyeyrgflhfyqlemelcrdaftqqfaistvwawmkskeqevrnitwiaecia
qnqrerinnyisvy

  • Chain 'e':
    Sequence, based on SEQRES records:
    >6o7te (e:)
mssfytvvgvfivvsamsvlfwimapknnqavwrstviltlammflmwaitflcqlhplv
aprrsdlrpefae

    Sequence, based on observed residues (ATOM records):
    >6o7te (e:)
fytvvgvfivvsamsvlfwimapknnqavwrstviltlammflmwaitflcqlhplvapr
rsdl

  • Chain 'f':
    Sequence, based on SEQRES records:
    >6o7tf (f:)
mrpvvstgkawcctvlsafgvvilsviahlfntnhesfvgsindpedgpavahtvylaal
vylvffvfcgfqvylarrkpsielr

    Sequence, based on observed residues (ATOM records):
    >6o7tf (f:)
wcctvlsafgvvilsviahlfntnhesfvgsindpedgpavahtvylaalvylvffvfcg
fqv

  • Chain 'g':
    Sequence, based on SEQRES records:
    >6o7tg (g:)
mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
qqprlfvgmililifaevlglyglivalllnsratqdvvc

    Sequence, based on observed residues (ATOM records):
    >6o7tg (g:)
mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
qqprlfvgmililifaevlglyglivalllnsrat

  • Chain 'h':
    Sequence, based on SEQRES records:
    >6o7th (h:)
mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
qqprlfvgmililifaevlglyglivalllnsratqdvvc

    Sequence, based on observed residues (ATOM records):
    >6o7th (h:)
telcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimag
iiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssq
qprlfvgmililifaevlglyglivalllnsratqdvvc

  • Chain 'i':
    Sequence, based on SEQRES records:
    >6o7ti (i:)
mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
qqprlfvgmililifaevlglyglivalllnsratqdvvc

    Sequence, based on observed residues (ATOM records):
    >6o7ti (i:)
telcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimag
iiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssq
qprlfvgmililifaevlglyglivalllnsratqdvv

  • Chain 'j':
    Sequence, based on SEQRES records:
    >6o7tj (j:)
mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
qqprlfvgmililifaevlglyglivalllnsratqdvvc

    Sequence, based on observed residues (ATOM records):
    >6o7tj (j:)
telcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimag
iiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssq
qprlfvgmililifaevlglyglivalllnsratqdvv

  • Chain 'k':
    Sequence, based on SEQRES records:
    >6o7tk (k:)
mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
qqprlfvgmililifaevlglyglivalllnsratqdvvc

    Sequence, based on observed residues (ATOM records):
    >6o7tk (k:)
telcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimag
iiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssq
qprlfvgmililifaevlglyglivalllnsratqdvv

  • Chain 'l':
    Sequence, based on SEQRES records:
    >6o7tl (l:)
mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
qqprlfvgmililifaevlglyglivalllnsratqdvvc

    Sequence, based on observed residues (ATOM records):
    >6o7tl (l:)
telcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimag
iiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssq
qprlfvgmililifaevlglyglivalllnsratqd

  • Chain 'm':
    Sequence, based on SEQRES records:
    >6o7tm (m:)
mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
qqprlfvgmililifaevlglyglivalllnsratqdvvc

    Sequence, based on observed residues (ATOM records):
    >6o7tm (m:)
telcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimag
iiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssq
qprlfvgmililifaevlglyglivalllnsratqdvv

  • Chain 'n':
    Sequence, based on SEQRES records:
    >6o7tn (n:)
mtelcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvima
giiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgss
qqprlfvgmililifaevlglyglivalllnsratqdvvc

    Sequence, based on observed residues (ATOM records):
    >6o7tn (n:)
telcpvyapffgaigcasaiiftslgaaygtaksgvgicatcvlrpdllfknivpvimag
iiaiyglvvsvlvcyslgqkqalytgfiqlgaglsvglsglaagfaigivgdagvrgssq
qprlfvgmililifaevlglyglivalllnsratqdvv

  • Chain 'o':
    Sequence, based on SEQRES records:
    >6o7to (o:)
mstqlasniyaplyapffgfagcaaamvlsclgaaigtaksgigiagigtfkpelimksl
ipvvmsgilaiyglvvavliagnlsptedytlfngfmhlscglcvgfaclssgyaigmvg
dvgvrkymhqprlfvgivlilifsevlglygmivalilntrgse

    Sequence, based on observed residues (ATOM records):
    >6o7to (o:)
sniyaplyapffgfagcaaamvlsclgaaigtaksgigiagigtfkpelimkslipvvms
gilaiyglvvavliagnlsptedytlfngfmhlscglcvgfaclssgyaigmvgdvgvrk
ymhqprlfvgivlilifsevlglygmivalilntrg