PDB entry 6o7h

View 6o7h on RCSB PDB site
Description: cryo-em structure of csm-crrna-target rna ternary complex in complex with ca4 in type iii-a crispr-cas system
Deposited on 2019-03-07, released 2019-07-31
The last revision was dated 2019-09-18, with a file datestamp of 2019-09-13.
Experiment type: EM
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A)
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: csm1, cas10, TON_0893
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Csm2
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: TON_0894
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Csm3
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: TON_0895
    Database cross-references and differences (RAF-indexed):
    • Uniprot B6YWC0
      • conflict (37)
  • Chain 'D':
    Compound: Csm3
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: TON_0895
    Database cross-references and differences (RAF-indexed):
    • Uniprot B6YWC0 (2-End)
      • conflict (37)
  • Chain 'E':
    Compound: Csm4
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: TON_0896
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Csm5
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Database cross-references and differences (RAF-indexed):
    • PDB 6O7H (0-End)
  • Chain 'G':
    Compound: RNA (38-mer)
    Species: Thermococcus onnurineus (strain NA1), synthetic [TaxId:523850]
  • Chain 'H':
    Compound: RNA (40-mer)
    Species: Thermococcus onnurineus (strain NA1), synthetic [TaxId:523850]
  • Chain 'K':
    Compound: Cyclic DNA cA4
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: ZN, G

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6o7hA (A:)
    mgsshhhhhhsqdpmeideltalggllhdigkpvqraglysgdhstqgarflrdlaentg
    raeyellslfsefhhkghmkndelmirrikelsperfgltmedvlnalwivyeadnlasg
    ereegqpqasrplysvfnpgkaypwaeldfekelpvpgdvfsirsqdyrelvkrlweels
    kaklrsdrllpvlekyltfvssvtsegniislydhmrmtsaialamlragctaedvrsgr
    crkekrflliegdfsgiqdfiyrvsgkgtlkylrarsayleligwdvvleilsrlgltra
    nvvfnagghfmiiaqntpdavkeleeirakavewlyrefesdlylaiewepvsgrefgre
    ggknlfaearkrlkhkltvrklkrfgeikglfehghterlaecpvcgrelpegklepsas
    dpetkvcptcnrlvslggnlpkllgfgrtakndagvlvegpfsgfvpylqggrpvgeqil
    vkntlnpgeipesaqfvpyfvadyfkkdpkggvatfeelsmastgtrrlgvmkgdvdrlg
    effssmdspsklatasrfmdyffkgyigaiiegkfgyiigdvpslrdwpeepdivvvyag
    gddffivgawdqifelafrvrrafnaytggkltlsvglgyfdertpiyrmadvvserldt
    akdegrnrvfvvgrsrpldgkhklsyewnhyeelwrtyapriyagngrlkgkleskkgll
    wklleirelyvrdpndvrwayltayllgrhglsdlfpelvgidtkaverkepqpvywvdg
    vlkivlmavrr
    

    Sequence, based on observed residues (ATOM records):
    >6o7hA (A:)
    eideltalggllhdigkpvqraglysgdhstqgarflrdlaentgraeyellslfsefhh
    kghmkndelmirrikelsperfgltmedvlnalwivyeadnlasgepqasrplysvfnpg
    kaypwaeldfekelpvpgdvfsirsqdyrelvkrlweelskaklrsdrllpvlekyltfv
    ssvtsegniislydhmrmtsaialamlragctaedvrsgrcrkekrflliegdfsgiqdf
    iyrvsgkgtlkylrarsayleligwdvvleilsrlgltranvvfnagghfmiiaqntpda
    vkeleeirakavewlyrefesdlylaiewepvsgrefgreggknlfaearkrlkhkltvr
    klkrfgeikglfehghterlaecpvcgrelpegklepsasdpetkvcptcnrlvslggnl
    pkllgfgrtakndagvlvegpfsgfvpylqggrpvgeqilvkntlnpgeipesaqfvpyf
    vadyfkkdpkggvatfeelsmastgtrrlgvmkgdvdrlgeffssmdspsklatasrfmd
    yffkgyigaiiegkfgyiigdvpslrdwpeepdivvvyaggddffivgawdqifelafrv
    rrafnaytggkltlsvglgyfdertpiyrmadvvserldtakdegrnrvfvvgrsrpldg
    khklsyewnhyeelwrtyapriyagngrlkgkleskkgllwklleirelyvrdpndvrwa
    yltayllgrhglsdlfpelvgidtkaverkepqpvywvdgvlkivlmavrr
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6o7hB (B:)
    gsvayhqkhggygrggygrqdrpqvdasrlfgespdvvgikkmlegkgkqweaiqpyfdn
    vvreaknflewspnkrlanavtvaayltsqglktnqvrkildmarttelkvkrgegdikd
    dlvkmryllaytvgkatgqskysldafhrildpmlevlmgspkkenfekfydflqavvay
    hkffgggd
    

    Sequence, based on observed residues (ATOM records):
    >6o7hB (B:)
    vdasrlfgespdvvgikkmlekgkqweaiqpyfdnvvreaknflewspnkrlanavtvaa
    yltsqglildmarttelkvkikddlvkmryllaytvgkatgqskysldafhrildpmlev
    lmgspkkenfekfydflqavvayhkffggg
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6o7hC (C:)
    gsmdrrfygkivikgkikavtglhigsqrdiseiggianpvikdphtglpyipgsslkgr
    lrslfeilvnsrlgewrekypslanyspgscrpdnqencgkffnrkinrgwihvcpdyet
    alacpvcrlfgasgkesnfpsriivrdafltkeweekwrageaiteakievgidrvtsqa
    nprtnervvagaefefeiiynventthwrddiknlltamalledsylggsgsrgygkvkf
    ifdsfefrpldyyrtgkdedivsidareksvsdilsgfdslfsevegkleag
    

    Sequence, based on observed residues (ATOM records):
    >6o7hC (C:)
    rfygkivikgkikavtglhigsqrgianpvikdphtglpyipgsslkgrlrslfeilvns
    rlgewrekypslanyspgscrpdnqencgkffnrkinrgwihvcpdyetalacpvcrlfg
    asgkesnfpsriivrdafltkeweekwrageaiteakievgidrvtsqanprtnervvag
    aefefeiiynventthwrddiknlltamalledsylggsgsrgygkvkfifdsfefrpld
    yyrtgkdedivsidareksvsdilsgfdslfsevegkl
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6o7hD (D:)
    gsmdrrfygkivikgkikavtglhigsqrdiseiggianpvikdphtglpyipgsslkgr
    lrslfeilvnsrlgewrekypslanyspgscrpdnqencgkffnrkinrgwihvcpdyet
    alacpvcrlfgasgkesnfpsriivrdafltkeweekwrageaiteakievgidrvtsqa
    nprtnervvagaefefeiiynventthwrddiknlltamalledsylggsgsrgygkvkf
    ifdsfefrpldyyrtgkdedivsidareksvsdilsgfdslfsevegkleag
    

    Sequence, based on observed residues (ATOM records):
    >6o7hD (D:)
    mdrrfygkivikgkikavtglhigsqiseiggianpvikdphtglpyipgsslkgrlrsl
    feilvnsrlgewrekypslanyspgscrpdnqencgkffnrkinrgwihvcpdyetalac
    pvcrlfgasgkesnfpsriivrdafltkeweekwrageaiteakievgidrvtsqanprt
    nervvagaefefeiiynventthwrddiknlltamalledsylggsgsrgygkvkfifds
    fefrpldyyrtgkdedivsidareksvsdilsgfdslfsevegkl
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6o7hE (E:)
    mpkfiavklipkgpfrdipradtlfgaignaisaihgqsaveelvdafvggarissafpy
    sgdtyylpkplsvepalegiltgldeeeryttakrlrkakyldlknfelalrlrpftipe
    eipyarvdvprvvldrvtqdssiyfweeirfreksgvyflysgprevfdgyiapamrflg
    dtgiggkstwgaglfevefhemkidapgseysvtlsnalptktpvlwrllrkggwsfgrr
    kprmtfiaegsivkndpggmerlelglshevyvygltfplgvelpegle
    

    Sequence, based on observed residues (ATOM records):
    >6o7hE (E:)
    pkfiavklipkgpfrdipradtlfgaignaisaihgqsaveelvdafvggarissafpys
    gdtyylpkplsvepalegiltgldeeeryttakrlrkakyldlknfelalrlrpftipee
    ipyarvdvprvvldrvtqdssiyfweeirfreksgvyflysgprevfdgyiapamrflgd
    tgiggkstwgaglfevefhemkidapgseysvtlsnalptktpvlwrllrkggwsfgrrk
    prmtfiaegsivkndpggmerlelglshevyvygltfplgvelpeg
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6o7hF (F:)
    mtertlkvlsplhigtgneltpvdiypreniihvldterxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxrksmqikefiklngrpyipgsslkgairtavl
    ykalkecxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxiryepkrdp
    mkalivrdskpvgrkhlavyhvevignpqpipiwveaiepgaatdveihvdtealrlnad
    yfngllweclkergepgevfedflweavdefytavmkyetievqkfgrytsqvrsfyasl
    edhsghvlrlgwgsgwlamtiglllvekgykwenvrkklglgkkpggsgfsrefpktrrl
    adgmpmgwvvlehhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6o7hF (F:)
    mtertlkvlsplhigtgneltpvdiypreniihvldterxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxrksmqikefiklngrpyipgsslkgairtavl
    ykalkecxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxiryepkrdp
    mkalivrdskpvgrkhlavyhvevignpqpipiwveaiepgaatdveihvdtealrlnad
    yfngllweclkergepgevfedflweavdefytavmkyetievqkfsqvrsfyasledhs
    ghvlrlgwgsgwlamtiglllvekgykwenvrkklglgkkrefpktrrladgmpmgwvvl
    e
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'K':
    No sequence available.