PDB entry 6o64

View 6o64 on RCSB PDB site
Description: Crystal Structure of Arabidopsis thaliana Spermidine Synthase isoform 2 (AtSPDS2)
Class: transferase
Keywords: Polyamine metabolism, Putrescine Biosynthesis, Transferase, dc-SAM, MTA
Deposited on 2019-03-05, released 2019-06-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spermidine synthase 2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN2, At1g70310, F17O7.16
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o64a_
  • Chain 'B':
    Compound: Spermidine synthase 2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN2, At1g70310, F17O7.16
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o64b_
  • Chain 'C':
    Compound: Spermidine synthase 2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN2, At1g70310, F17O7.16
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o64c_
  • Chain 'D':
    Compound: Spermidine synthase 2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN2, At1g70310, F17O7.16
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o64d_
  • Chain 'E':
    Compound: Spermidine synthase 2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN2, At1g70310, F17O7.16
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o64e_
  • Chain 'F':
    Compound: Spermidine synthase 2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN2, At1g70310, F17O7.16
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o64f_
  • Chain 'G':
    Compound: Spermidine synthase 2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN2, At1g70310, F17O7.16
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o64g_
  • Chain 'H':
    Compound: Spermidine synthase 2
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN2, At1g70310, F17O7.16
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6o64h_
  • Heterogens: ACT, PEG, FMT, MLI, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6o64A (A:)
snakepscmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlv
ldgviqlterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidice
idkmvvdvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpake
lfekpffesvnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptyp
sgvigfmlcssegpqvdfkkpvslidtdessikshcplkyynaeihsaafclpsfakkvi
dskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o64A (A:)
cmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlvldgviql
terdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidiceidkmvvd
vakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpipakelfekpffe
svnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptypsgvigfml
cssegpqvdfkkpvslicplkyynaeihsaafclpsfakkvids

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6o64B (B:)
snakepscmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlv
ldgviqlterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidice
idkmvvdvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpake
lfekpffesvnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptyp
sgvigfmlcssegpqvdfkkpvslidtdessikshcplkyynaeihsaafclpsfakkvi
dskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o64B (B:)
scmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlvldgviq
lterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidiceidkmvv
dvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpiakelfekpffe
svnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptypsgvigfml
cssegpqvdfkkpvslissikshcplkyynaeihsaafclpsfakkvids

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6o64C (C:)
snakepscmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlv
ldgviqlterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidice
idkmvvdvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpake
lfekpffesvnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptyp
sgvigfmlcssegpqvdfkkpvslidtdessikshcplkyynaeihsaafclpsfakkvi
dskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o64C (C:)
pgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlvldgviqlterdec
ayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidiceidkmvvdvakqyf
pnvavgyedprvnliigdgvaflknaaegtydavivdssdpakelfekpffesvnralrp
ggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptypsgvigfmlcssegpqv
dfkkpvslidcplkyynaeihsaafclpsfakkvids

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6o64D (D:)
snakepscmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlv
ldgviqlterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidice
idkmvvdvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpake
lfekpffesvnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptyp
sgvigfmlcssegpqvdfkkpvslidtdessikshcplkyynaeihsaafclpsfakkvi
dskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o64D (D:)
pgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlvldgviqlterdec
ayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidiceidkmvvdvakqyf
pnvavgyedprvnliigdgvaflknaaegtydavivdssdpakelfekpffesvnralrp
ggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptypsgvigfmlcssegpqv
dfkkpvslicplkyynaeihsaafclpsfakkvid

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6o64E (E:)
snakepscmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlv
ldgviqlterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidice
idkmvvdvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpake
lfekpffesvnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptyp
sgvigfmlcssegpqvdfkkpvslidtdessikshcplkyynaeihsaafclpsfakkvi
dskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o64E (E:)
siipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlvldgviqlter
decayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidiceidkmvvdvak
qyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpakelfekpffesv
nralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptypsgvigfmlcs
segpqvdfkkpvslicplkyynaeihsaafclpsfakkvid

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6o64F (F:)
snakepscmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlv
ldgviqlterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidice
idkmvvdvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpake
lfekpffesvnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptyp
sgvigfmlcssegpqvdfkkpvslidtdessikshcplkyynaeihsaafclpsfakkvi
dskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o64F (F:)
pscmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlvldgvi
qlterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidiceidkmv
vdvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpakelfekp
ffesvnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptypsgvig
fmlcssegpqvdfkkpvslicplkyynaeihsaafclpsfakkvids

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6o64G (G:)
snakepscmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlv
ldgviqlterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidice
idkmvvdvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpake
lfekpffesvnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptyp
sgvigfmlcssegpqvdfkkpvslidtdessikshcplkyynaeihsaafclpsfakkvi
dskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o64G (G:)
epscmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlvldgv
iqlterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidiceidkm
vvdvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpakelfek
pffesvnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptypsgvi
gfmlcssegpqvdfkkpvslicplkyynaeihsaafclpsfakkvids

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6o64H (H:)
snakepscmssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlv
ldgviqlterdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidice
idkmvvdvakqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpake
lfekpffesvnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptyp
sgvigfmlcssegpqvdfkkpvslidtdessikshcplkyynaeihsaafclpsfakkvi
dskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o64H (H:)
mssiipgwfseispmwpgeahslkvekilfqgksdyqdvivfqsatygkvlvldgviqlt
erdecayqemithlplcsisnpkkvlvigggdggvlrevarhssveqidiceidkmvvdv
akqyfpnvavgyedprvnliigdgvaflknaaegtydavivdssdpigpakelfekpffe
svnralrpggvvctqaeslwlhmdiiedivsncrdifkgsvnyawtsvptypsgvigfml
cssegpqvdfkkpvslidcplkyynaeihsaafclpsfakk