PDB entry 6o63

View 6o63 on RCSB PDB site
Description: Crystal Structure of Arabidopsis thaliana Spermidine Synthase isoform 1 (AtSPDS1)
Class: transferase
Keywords: Polyamine metabolism, Putrescine Biosynthesis, Transferase, dc-SAM, MTA
Deposited on 2019-03-05, released 2019-06-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-06-05, with a file datestamp of 2019-05-30.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spermidine synthase 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN1, At1g23820, F5O8.38
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6o63a_
  • Chain 'B':
    Compound: Spermidine synthase 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN1, At1g23820, F5O8.38
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6o63b_
  • Chain 'C':
    Compound: Spermidine synthase 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN1, At1g23820, F5O8.38
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6o63c_
  • Chain 'D':
    Compound: Spermidine synthase 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: SPDSYN1, At1g23820, F5O8.38
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6o63d_
  • Heterogens: PEG, GOL, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6o63A (A:)
snamdaketsatdlkrpreeddnggaatmetengdqkkepacfstvipgwfsemspmwpg
eahslkvekvlfqgksdyqdvivfqsatygkvlvldgviqlterdecayqemithlplcs
ipnpkkvlvigggdggvlrevarhasieqidmceidkmvvdvskqffpdvaigyedprvn
lvigdgvaflknaaegsydavivdssdpigpakelfekpffqsvaralrpggvvctqaes
lwlhmdiiedivsncreifkgsvnyawtsvptypsgvigfmlcstegpdvdfkhplnpid
esssksngplkfynaeihsaafclpsfakkvieskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o63A (A:)
pacfstvipgwfsemspmwpgeahslkvekvlfqgksdyqdvivfqsatygkvlvldgvi
qlterdecayqemithlplcsipnpkkvlvigggdggvlrevarhasieqidmceidkmv
vdvskqffpdvaigyedprvnlvigdgvaflknaaegsydavivdssdpigpakelfekp
ffqsvaralrpggvvctqaeslwlhmdiiedivsncreifkgsvnyawtsvptypsgvig
fmlcstegpdvdfkhplnpidessngplkfynaeihsaafclpsfakkvie

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6o63B (B:)
snamdaketsatdlkrpreeddnggaatmetengdqkkepacfstvipgwfsemspmwpg
eahslkvekvlfqgksdyqdvivfqsatygkvlvldgviqlterdecayqemithlplcs
ipnpkkvlvigggdggvlrevarhasieqidmceidkmvvdvskqffpdvaigyedprvn
lvigdgvaflknaaegsydavivdssdpigpakelfekpffqsvaralrpggvvctqaes
lwlhmdiiedivsncreifkgsvnyawtsvptypsgvigfmlcstegpdvdfkhplnpid
esssksngplkfynaeihsaafclpsfakkvieskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o63B (B:)
fstvipgwfsemspmwpgeahslkvekvlfqgksdyqdvivfqsatygkvlvldgviqlt
erdecayqemithlplcsipnpkkvlvigggdggvlrevarhasieqidmceidkmvvdv
skqffpdvaigyedprvnlvigdgvaflknaaegsydavivdssdpigpakelfekpffq
svaralrpggvvctqaeslwlhmdiiedivsncreifkgsvnyawtsvptypsgvigfml
cstegpdvdfkhplnpidngplkfynaeihsaafclpsfakkvies

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6o63C (C:)
snamdaketsatdlkrpreeddnggaatmetengdqkkepacfstvipgwfsemspmwpg
eahslkvekvlfqgksdyqdvivfqsatygkvlvldgviqlterdecayqemithlplcs
ipnpkkvlvigggdggvlrevarhasieqidmceidkmvvdvskqffpdvaigyedprvn
lvigdgvaflknaaegsydavivdssdpigpakelfekpffqsvaralrpggvvctqaes
lwlhmdiiedivsncreifkgsvnyawtsvptypsgvigfmlcstegpdvdfkhplnpid
esssksngplkfynaeihsaafclpsfakkvieskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o63C (C:)
tvipgwfsemspmwpgeahslkvekvlfqgksdyqdvivfqsatygkvlvldgviqlter
decayqemithlplcsipnpkkvlvigggdggvlrevarhasieqidmceidkmvvdvsk
qffpdvaigyedprvnlvigdgvaflknaaegsydavivdssdpigpakelfekpffqsv
aralrpggvvctqaeslwlhmdiiedivsncreifkgsvnyawtsvptypsgvigfmlcs
tegpdvdfkhplnpidgplkfynaeihsaafclpsfakkvie

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6o63D (D:)
snamdaketsatdlkrpreeddnggaatmetengdqkkepacfstvipgwfsemspmwpg
eahslkvekvlfqgksdyqdvivfqsatygkvlvldgviqlterdecayqemithlplcs
ipnpkkvlvigggdggvlrevarhasieqidmceidkmvvdvskqffpdvaigyedprvn
lvigdgvaflknaaegsydavivdssdpigpakelfekpffqsvaralrpggvvctqaes
lwlhmdiiedivsncreifkgsvnyawtsvptypsgvigfmlcstegpdvdfkhplnpid
esssksngplkfynaeihsaafclpsfakkvieskan

    Sequence, based on observed residues (ATOM records): (download) 
    >6o63D (D:)
stvipgwfsemspmwpgeahslkvekvlfqgksdyqdvivfqsatygkvlvldgviqlte
rdecayqemithlplcsipnpkkvlvigggdggvlrevarhasieqidmceidkmvvdvs
kqffpdvgyedprvnlvigdgvaflknaaegsydavivdssdpigpakelfekpffqsva
ralrpggvvctqaeslwlhmdiiedivsncreifkgsvnyawtsvptypsgvigfmlcst
egpdvdfkhplnpigplkfynaeihsaafclpsfakkvies