PDB entry 6o3k

View 6o3k on RCSB PDB site
Description: Crystal structure of the unbound Fab fragment of the human HIV-1 neutralizing antibody PGZL1.H4K3
Class: immune system
Keywords: pgzl1.h4k3 anti hiv-1, gp41 mper, membrane lipids, broadly neutralising hiv-1 antibody, immune system
Deposited on 2019-02-26, released 2019-12-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: N/A
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: PGZL1.H4K3 heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6O3K (0-End)
    Domains in SCOPe 2.08: d6o3kh_
  • Chain 'L':
    Compound: PGZL1.H4K3 light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6O3K (0-End)
    Domains in SCOPe 2.08: d6o3kl1, d6o3kl2
  • Heterogens: GOL, SO4, HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6o3kH (H:)
kvqlvqsgaelkkpwssvrvsckasggsfssyafnwvrqapgqrlewlggivplvsstny
aqrfrgrvtisadrststvylemtgltsadtavyfcaregegwfgrplrafefwgqgtlv
tvstastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

    Sequence, based on observed residues (ATOM records): (download) 
    >6o3kH (H:)
kvqlvqsgaelkkpwssvrvsckasggsfssyafnwvrqapgqrlewlggivplvsstny
aqrfrgrvtisadrststvylemtgltsadtavyfcaregegwfgrplrafefwgqgtlv
tvstastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6o3kL (L:)
eivltqspgtfalspgeratlscrasqsvsggalawyqqkagqaprlliygtsgratgvp
grfsgsgsetdfsltisrlepedfavyycqqygtsqstfgqgtrletrrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >6o3kL (L:)
eivltqspgtfalspgeratlscrasqsvsggalawyqqkagqaprlliygtsgratgvp
grfsgsgsetdfsltisrlepedfavyycqqygtsqstfgqgtrletrrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrge