PDB entry 6o0x

View 6o0x on RCSB PDB site
Description: conformational states of cas9-sgrna-dna ternary complex in the presence of magnesium
Deposited on 2019-02-17, released 2019-07-10
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.28 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: crispr-associated endonuclease cas9/csn1
    Species: Streptococcus pyogenes [TaxId:1314]
    Gene: cas9, csn1, SPy_1046
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: single guide RNA
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: 5' product of target strand DNA
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: non-target strand DNA
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'c':
    Compound: 3' product of target strand DNA
    Species: synthetic construct, synthetic [TaxId:32630]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6o0xA (A:)
    gaasmdkkysigldigtnsvgwavitdeykvpskkfkvlgntdrhsikknligallfdsg
    etaeatrlkrtarrrytrrknricylqeifsnemakvddsffhrleesflveedkkherh
    pifgnivdevayhekyptiyhlrkklvdstdkadlrliylalahmikfrghfliegdlnp
    dnsdvdklfiqlvqtynqlfeenpinasgvdakailsarlsksrrlenliaqlpgekkng
    lfgnlialslgltpnfksnfdlaedaklqlskdtydddldnllaqigdqyadlflaaknl
    sdaillsdilrvnteitkaplsasmikrydehhqdltllkalvrqqlpekykeiffdqsk
    ngyagyidggasqeefykfikpilekmdgteellvklnredllrkqrtfdngsiphqihl
    gelhailrrqedfypflkdnrekiekiltfripyyvgplargnsrfawmtrkseetitpw
    nfeevvdkgasaqsfiermtnfdknlpnekvlpkhsllyeyftvyneltkvkyvtegmrk
    paflsgeqkkaivdllfktnrkvtvkqlkedyfkkiecfdsveisgvedrfnaslgtyhd
    llkiikdkdfldneenediledivltltlfedremieerlktyahlfddkvmkqlkrrry
    tgwgrlsrklingirdkqsgktildflksdgfanrnfmqlihddsltfkediqkaqvsgq
    gdslhehianlagspaikkgilqtvkvvdelvkvmgrhkpeniviemarenqttqkgqkn
    srermkrieegikelgsqilkehpventqlqneklylyylqngrdmyvdqeldinrlsdy
    dvdhivpqsflkddsidnkvltrsdknrgksdnvpseevvkkmknywrqllnaklitqrk
    fdnltkaergglseldkagfikrqlvetrqitkhvaqildsrmntkydendklirevkvi
    tlksklvsdfrkdfqfykvreinnyhhahdaylnavvgtalikkypklesefvygdykvy
    dvrkmiakseqeigkatakyffysnimnffkteitlangeirkrplietngetgeivwdk
    grdfatvrkvlsmpqvnivkktevqtggfskesilpkrnsdkliarkkdwdpkkyggfds
    ptvaysvlvvakvekgkskklksvkellgitimerssfeknpidfleakgykevkkdlii
    klpkyslfelengrkrmlasagelqkgnelalpskyvnflylashyeklkgspedneqkq
    lfveqhkhyldeiieqisefskrviladanldkvlsaynkhrdkpireqaeniihlftlt
    nlgapaafkyfdttidrkrytstkevldatlihqsitglyetridlsqlggd
    

    Sequence, based on observed residues (ATOM records):
    >6o0xA (A:)
    kkysigldigtnsvgwavitdeykvpskkfkvlgntdrhsikknligallfdsgetaeat
    rlkrtarrrytrrknricylqeifsnemakvddsffhrleesflveedkkherhpifgni
    vdevayhekyptiyhlrkklvdstdkadlrliylalahmikfrghfliegdlnpdnsdvd
    klfiqlvqtynqlfeenpinaakailsarlsksrrlenliaqlkknglfgnlialslglt
    pnfksnfdlaedaklqlskdtydddldnllaqigdqyadlflaaknlsdaillsdilrvn
    teitkaplsasmikrydehhqdltllkalvrqqlpekykeiffdqskngyagyidggasq
    eefykfikpilekmdgteellvklnredllrkqrtfdngsiphqihlgelhailrrqedf
    ypflkdnrekiekiltfripyyvgplargnsrfawmtrkseetitpwnfeevvdkgasaq
    sfiermtnfdknlpnekvlpkhsllyeyftvyneltkvkyvtegmrkpaflsgeqkkaiv
    dllfktnrkvtvkqlkedyfkkiecfdsveisgvedrfnaslgtyhdllkiikdkdfldn
    eenediledivltltlfedremieerlktyahlfddkvmkqlkrrrytgwgrlsrkling
    irdkqsgktildflksdgfanrnfmqlihddsltfkediqkaqdslhehianlagspaik
    kgilqtvkvvdelvkvmgrhkpenivieqitkhvaqildsrmntkydendklirevkvit
    lksklvsdfrkdfqfykvreinnyhhahdaylnavvgtalikkrdfatvrkvlsmpqvni
    vkktevqtggfskesilpkrnsdkliarkkdwdpkkyggfdsptvaysvlvvakvekgks
    kklksvkellgitimerssfeknpidfleakgykevkkdliiklpkyslfelengrkrml
    asagelqkgnelalpskyvnflylashyeklkgspedneqkqlfveqhkhyldeiieqis
    efskrviladanldkvlsaynkhrdkpireqaeniihlftltnlgapaafkyfdttidrk
    rytstkevldatlihqsitglyetridlsqlg
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'c':
    No sequence available.