PDB entry 6nue

View 6nue on RCSB PDB site
Description: small conformation of apo crispr_csm complex
Deposited on 2019-01-31, released 2019-03-13
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CRISPR system Cms protein Csm2
    Species: Streptococcus thermophilus [TaxId:1308]
    Gene: CSM2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: CRISPR system Cms protein Csm2
    Species: Streptococcus thermophilus [TaxId:1308]
    Gene: CSM2
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: CRISPR type III-associated RAMP protein Csm3
    Species: Streptococcus thermophilus [TaxId:1308]
    Gene: csm3, CDA68_00842
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: CRISPR type III-associated RAMP protein Csm3
    Species: Streptococcus thermophilus [TaxId:1308]
    Gene: csm3, CDA68_00842
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: crRNA
    Species: Streptococcus thermophilus [TaxId:1308]
  • Chain 'I':
    Compound: CRISPR type III-associated RAMP protein Csm4
    Species: Streptococcus thermophilus [TaxId:1308]
    Gene: csm4, CDA68_00841
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A)
    Species: Streptococcus thermophilus [TaxId:1308]
    Gene: cas10, csm1
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: CRISPR system Cms protein Csm2
    Species: Streptococcus thermophilus [TaxId:1308]
    Gene: CSM2
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: CRISPR type III-associated RAMP protein Csm3
    Species: Streptococcus thermophilus [TaxId:1308]
    Gene: csm3, CDA68_00842
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: CRISPR type III-associated RAMP protein Csm3
    Species: Streptococcus thermophilus [TaxId:1308]
    Gene: csm3, CDA68_00842
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: CRISPR type III-associated RAMP protein Csm3
    Species: Streptococcus thermophilus [TaxId:1308]
    Gene: csm3, CDA68_00842
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ATP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6nueA (A:)
mailtdenyvdkaeraisllekdnkgnyllttsqirkllslcsslydrskerkfdelind
vsylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfkfyggk
d

    Sequence, based on observed residues (ATOM records):
    >6nueA (A:)
kaeraisllekdnkgnyllttsqirkllslcsslydrskerkfdelindvsylrvqfvyq
agreiavkdliekaqilealkeikdretlqrfcrymealvayfkfygg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6nueB (B:)
mailtdenyvdkaeraisllekdnkgnyllttsqirkllslcsslydrskerkfdelind
vsylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfkfyggk
d

    Sequence, based on observed residues (ATOM records):
    >6nueB (B:)
kaeraisllekdnkgnyllttsqirkllslcsslydrskerkfdelindvsylrvqfvyq
agreiavkdliekaqilealkeikdretlqrfcrymealvayfkfygg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6nueC (C:)
mtfakikfsaqirletglhiggsdafaaigaidspvikdpitnipiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafeklkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6nueC (C:)
tfakikfsaqirletglhiggsdafaaigaidspvikdpitnipiipgsslkgkmrtlla
kvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytevk
fentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleldy
lggsgsrgygkvafeklkattvfgnydvktln

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6nueE (E:)
mtfakikfsaqirletglhiggsdafaaigaidspvikdpitnipiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafeklkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6nueE (E:)
tfakikfsaqirletglhiggsdafaaigaidspvikdpitnipiipgsslkgkmrtlla
kvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytevk
fentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleldy
lggsgsrgygkvafeklkattvfgnydvktln

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6nueI (I:)
mtyklyimtfqnahfgsgtldsskltfsadrifsalvleslkmgkldaflaeanqdkftl
tdafpfqfgpflpkpigypkhdqidqsvdvkevrrqaklskklqflalenvddylngelf
eneehavidtvtknqphkdgnlyqvattrfsndtslyvianesdllnelmsslqysglgg
krssgfgrfeldiqniplelsdrltknhsdkvmslttalpvdadleeamedghylltkss
gfafshatnenyrkqdlykfasgstfsktfegqivdvrpldfphavlnyakplffklev

    Sequence, based on observed residues (ATOM records):
    >6nueI (I:)
yklyimtfqnahfgsgtldsskltfsadrifsalvleslkmgkldaflaeanqdkftltd
afpfqfgpflpkpigypkhdqidqsvdvkevrrqaklskklqflalenvddylngelfen
eehavidtvtknqphkdgnlyqvattrfsndtslyvianesdllnelmsslqysglggkr
ssgfgrfeldiqniplelsdrltknhsdkvmslttalpvdadleeamedghylltkssgf
afshatnenyrkqdlykfasgstfsktfegqivdvrpldfphavlnyakplffkl

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6nueJ (J:)
mkkekidlfygallhdigkviqratgerkkhalvgadwfdeiadnqvisdqiryhmanyq
sdklgndhlayityiadniasgvdrrqsneesdedasakiwdtytnqadifnvfgaqtdk
ryfkptvlnlkskpnfasatyepfskgdyaaiatriknelaefefnqaqidsllnlfeai
lsfvpsstnskeiadislaehsrltaafalaiydyledkgrhnykedlftkasafyeeea
fllasfdlsgiqdfiyniatsgaakqlkarslyldfmseyiadslldklglnranllyvg
gghayfvlantektvetlvqfekdfnqfllanfqtrlyvafgwgsfaakdimselnspes
yrqiyqkasrmisekkisrydyrtlmllnrggkssereceichsvenlvsyhdqkvcdic
rglyqfskeiahdhfiiteneglpigpnaclkgvafeklsqesfsrvyvkndykagtika
thvfvgdyqcdeihkyaalsknedglgikrlavvrldvddlgaafmagfsrqgngqystl
srsatfsrsmslffkvyinqfasdkklsiiyaggddvfaigswqdiiaftvelrqnfikw
tngkltlsagiglfadktpislmahqtgeleeaakgnekdsislfssdytfkfdrfitnv
yddkleqiryffnhqdergknfiykliellrnyeseekmnvarlayyltrleeltdkder
dkfkqfkklffkwytnnesdrkeaelalllyvyeirkd

    Sequence, based on observed residues (ATOM records):
    >6nueJ (J:)
kekidlfygallhdigkviqratgerkkhalvgadwfdeiadnqvisdqiryhmanyqsd
klgndhlayityiadniasgtnqadifnvfgaqtdkryfkptvlnlkskpnfasatyepf
skgdyaaiatriknelaefefnqaqidsllnlfeailsfvpsstnskeiadislaehsrl
taafalaiydyledkgrhnykedlftkasafyeeeafllasfdlsgiqdfiyniatsgaa
kqlkarslyldfmseyiadslldklglnranllyvggghayfvlantektvetlvqfekd
fnqfllanfqtrlyvafgwgsfaakdimselnspesyrqiyqkasrmisekkisrydyrt
lmllnrggkssereceichsvenlvsyhdqkvcdicrglyqfskeiahdhfiiteneglp
igpnaclkgvafeklsqesfsrvyvkndykagtikathvfvgdyqcdeihkyaalskned
glgikrlavvrldvddlgaafmagfsrqgngqystlsrsatfsrsmslffkvyinqfasd
kklsiiyaggddvfaigswqdiiaftvelrqnfikwtngkltlsagiglfadktpislma
hqtgeleeaakgnekdsislfssdytfkfdrfitnvyddkleqiryffnhqdergknfiy
kliellrnyeseekmnvarlayyltrleeltdkderdkfkqfkklffkwytnnesdrkea
elalllyvyeirk

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6nueM (M:)
mailtdenyvdkaeraisllekdnkgnyllttsqirkllslcsslydrskerkfdelind
vsylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfkfyggk
d

    Sequence, based on observed residues (ATOM records):
    >6nueM (M:)
kaeraisllekdnkgnyllttsqirkllslcsslydrskerkfdelindvsylrvqfvyq
agreiavkdliekaqilealkeikdretlqrfcrymealvayfkfygg

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6nueN (N:)
mtfakikfsaqirletglhiggsdafaaigaidspvikdpitnipiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafeklkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6nueN (N:)
tfakikfsaqirletglhiggsdafaaigaidspvikdpitnipiipgsslkgkmrtlla
kvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytevk
fentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleldy
lggsgsrgygkvafeklkattvfgnydvktln

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6nueO (O:)
mtfakikfsaqirletglhiggsdafaaigaidspvikdpitnipiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafeklkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6nueO (O:)
tfakikfsaqirletglhiggsdafaaigaidspvikdpitnipiipgsslkgkmrtlla
kvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytevk
fentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleldy
lggsgsrgygkvafeklkattvfgnydvktln

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6nueP (P:)
mtfakikfsaqirletglhiggsdafaaigaidspvikdpitnipiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafeklkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6nueP (P:)
tfakikfsaqirletglhiggsdafaaigaidspvikdpitnipiipgsslkgkmrtlla
kvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytevk
fentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleldy
lggsgsrgygkvafeklkattvfgnydvktln