PDB entry 6nsk

View 6nsk on RCSB PDB site
Description: cryoem structure of helicobacter pylori urea channel in open state.
Deposited on 2019-01-24, released 2019-04-03
The last revision was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: EM
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acid-activated urea channel
    Species: Helicobacter pylori (strain J99 / ATCC 700824) [TaxId:85963]
    Gene: ureI, jhp_0066
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56874 (0-200)
      • insertion (54)
  • Chain 'B':
    Compound: Acid-activated urea channel
    Species: Helicobacter pylori (strain J99 / ATCC 700824) [TaxId:85963]
    Gene: ureI, jhp_0066
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56874 (0-200)
      • insertion (54)
  • Chain 'C':
    Compound: Acid-activated urea channel
    Species: Helicobacter pylori (strain J99 / ATCC 700824) [TaxId:85963]
    Gene: ureI, jhp_0066
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56874 (0-200)
      • insertion (54)
  • Chain 'D':
    Compound: Acid-activated urea channel
    Species: Helicobacter pylori (strain J99 / ATCC 700824) [TaxId:85963]
    Gene: ureI, jhp_0066
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56874 (0-200)
      • insertion (54)
  • Chain 'E':
    Compound: Acid-activated urea channel
    Species: Helicobacter pylori (strain J99 / ATCC 700824) [TaxId:85963]
    Gene: ureI, jhp_0066
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56874 (0-200)
      • insertion (54)
  • Chain 'F':
    Compound: Acid-activated urea channel
    Species: Helicobacter pylori (strain J99 / ATCC 700824) [TaxId:85963]
    Gene: ureI, jhp_0066
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56874 (0-200)
      • insertion (54)
  • Heterogens: XP4

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6nskA (A:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhptapve
ghhhhhhaedivqvshhltsfygpatgllfgftylyaainhtfgldwrpyswyslfvain
tvpaailshysdmlddhkvlgitegdwwaiiwlawgvlwltafienilkiplgkftpwla
iiegiltawipawllfiqhwv

    Sequence, based on observed residues (ATOM records):
    >6nskA (A:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhpshhlt
sfygpatgllfgftylyaainhtfgldwrpyswyslfvaintvpaailshysdmlddhkv
lgitegdwwaiiwlawgvlwltafienilkiplgkftpwlaiiegiltawipawllfiqh
wv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6nskB (B:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhptapve
ghhhhhhaedivqvshhltsfygpatgllfgftylyaainhtfgldwrpyswyslfvain
tvpaailshysdmlddhkvlgitegdwwaiiwlawgvlwltafienilkiplgkftpwla
iiegiltawipawllfiqhwv

    Sequence, based on observed residues (ATOM records):
    >6nskB (B:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhpshhlt
sfygpatgllfgftylyaainhtfgldwrpyswyslfvaintvpaailshysdmlddhkv
lgitegdwwaiiwlawgvlwltafienilkiplgkftpwlaiiegiltawipawllfiqh
wv

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6nskC (C:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhptapve
ghhhhhhaedivqvshhltsfygpatgllfgftylyaainhtfgldwrpyswyslfvain
tvpaailshysdmlddhkvlgitegdwwaiiwlawgvlwltafienilkiplgkftpwla
iiegiltawipawllfiqhwv

    Sequence, based on observed residues (ATOM records):
    >6nskC (C:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhpshhlt
sfygpatgllfgftylyaainhtfgldwrpyswyslfvaintvpaailshysdmlddhkv
lgitegdwwaiiwlawgvlwltafienilkiplgkftpwlaiiegiltawipawllfiqh
wv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6nskD (D:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhptapve
ghhhhhhaedivqvshhltsfygpatgllfgftylyaainhtfgldwrpyswyslfvain
tvpaailshysdmlddhkvlgitegdwwaiiwlawgvlwltafienilkiplgkftpwla
iiegiltawipawllfiqhwv

    Sequence, based on observed residues (ATOM records):
    >6nskD (D:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhpshhlt
sfygpatgllfgftylyaainhtfgldwrpyswyslfvaintvpaailshysdmlddhkv
lgitegdwwaiiwlawgvlwltafienilkiplgkftpwlaiiegiltawipawllfiqh
wv

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6nskE (E:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhptapve
ghhhhhhaedivqvshhltsfygpatgllfgftylyaainhtfgldwrpyswyslfvain
tvpaailshysdmlddhkvlgitegdwwaiiwlawgvlwltafienilkiplgkftpwla
iiegiltawipawllfiqhwv

    Sequence, based on observed residues (ATOM records):
    >6nskE (E:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhpshhlt
sfygpatgllfgftylyaainhtfgldwrpyswyslfvaintvpaailshysdmlddhkv
lgitegdwwaiiwlawgvlwltafienilkiplgkftpwlaiiegiltawipawllfiqh
wv

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6nskF (F:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhptapve
ghhhhhhaedivqvshhltsfygpatgllfgftylyaainhtfgldwrpyswyslfvain
tvpaailshysdmlddhkvlgitegdwwaiiwlawgvlwltafienilkiplgkftpwla
iiegiltawipawllfiqhwv

    Sequence, based on observed residues (ATOM records):
    >6nskF (F:)
mlglvllyvgivlisngicgltkvdpkstavmnffvgglsivcnvvvitysalhpshhlt
sfygpatgllfgftylyaainhtfgldwrpyswyslfvaintvpaailshysdmlddhkv
lgitegdwwaiiwlawgvlwltafienilkiplgkftpwlaiiegiltawipawllfiqh
wv