PDB entry 6npw

View 6npw on RCSB PDB site
Description: ssu72/sympk in complex with ser2/ser5 phosphorylated peptide
Deposited on 2019-01-18, released 2019-04-24
The last revision was dated 2019-06-05, with a file datestamp of 2019-05-30.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Symplekin
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Sym, CG2097
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8MSU4 (6-End)
      • expression tag (5)
  • Chain 'B':
    Compound: Ssu72 ortholog, LD40846p
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Ssu72, CG14216, Dmel_CG14216
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9VWE4 (Start-199)
      • engineered mutation (17)
      • engineered mutation (148)
  • Chain 'C':
    Compound: Symplekin
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Sym, CG2097
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Ssu72 ortholog, LD40846p
    Species: Drosophila melanogaster [TaxId:7227]
    Gene: Ssu72, CG14216, Dmel_CG14216
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9VWE4 (Start-199)
      • engineered mutation (17)
      • engineered mutation (148)
  • Chain 'E':
    Compound: Ser2/Ser5 phosphorylated peptide
    Species: Saccharomyces cerevisiae RM11-1a, synthetic [TaxId:285006]
    Database cross-references and differences (RAF-indexed):
    • PDB 6NPW
  • Heterogens: PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6npwA (A:)
gpgsgmtdektatarakvvdwcnelviaspstkcellakvqetvlgscaelaeeflesvl
slahdsnmevrkqvvafveqvckvkvellphvinvvsmllrdnsaqvikrviqacgsiyk
nglqylcslmepgdsaeqawnilslikaqildmidnendgirtnaikflegvvvlqsfad
edslkrdgdfsladvpdhctlfrreklqeegnnildillqfhgtthissvnliactsslc
tiakmrpifmgavveafkqlnanlpptltdsqvssvrkslkmqlqtllknrgafefasti
rgmlvdlgsstneiqklipkmdkqemarrqkrilenaaq

    Sequence, based on observed residues (ATOM records):
    >6npwA (A:)
mtdektatarakvvdwcnelviaspstkcellakvqetvlgscaelaeeflesvlslahd
snmevrkqvvafveqvckvkvellphvinvvsmllrdnsaqvikrviqacgsiyknglqy
lcslmepgdsaeqawnilslikaqildmidnendgirtnaikflegvvvlqsfadedslk
rdgdfsladvpdhctlfrreklqeegnnildillqfhgtthissvnliactsslctiakm
rpifmgavveafkqlnanlpptltdsqvssvrkslkmqlqtllknrgafefastirgmlv
dlgsstneiqklipkmdkqemarrqkrilena

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6npwB (B:)
gpgsgmtdpsklavavvdssnmnrsmeahnflakkgfnvrsygtgervklpgmafdkpnv
yefgtkyediyrdleskdkefytqngllhmldrnrrikkcperfqdtkeqfdiivtveer
vydlvvmhmesmesvdnrpvhvlnvdvvnnaedalmgafvitdminmmakstdldndide
liqefeerrkrvilhsvlfy

    Sequence, based on observed residues (ATOM records):
    >6npwB (B:)
psklavavvdssnmnrsmeahnflakkgfnvrsygtgervklpgmafdkpnvyefgtkye
diyrdleskdkefytqngllhmldrnrrikkcperfqdtkeqfdiivtveervydlvvmh
mesmesvdnrpvhvlnvdvvnnaedalmgafvitdminmmakstdldndideliqefeer
rkrvilhsvlfy

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6npwC (C:)
gpgsgmtdektatarakvvdwcnelviaspstkcellakvqetvlgscaelaeeflesvl
slahdsnmevrkqvvafveqvckvkvellphvinvvsmllrdnsaqvikrviqacgsiyk
nglqylcslmepgdsaeqawnilslikaqildmidnendgirtnaikflegvvvlqsfad
edslkrdgdfsladvpdhctlfrreklqeegnnildillqfhgtthissvnliactsslc
tiakmrpifmgavveafkqlnanlpptltdsqvssvrkslkmqlqtllknrgafefasti
rgmlvdlgsstneiqklipkmdkqemarrqkrilenaaq

    Sequence, based on observed residues (ATOM records):
    >6npwC (C:)
vvdwcnelviaspstkcellakvqetvlgscaelaeeflesvlslahdsnmevrkqvvaf
veqvckvkvellphvinvvsmllrdnsaqvikrviqacgsiyknglqylcslmepgdsae
qawnilslikaqildmidnendgirtnaikflegvvvlqsfadedslkrdgdfsladvpd
hctlfrreklqeegnnildillqfhgtthissvnliactsslctiakmrpifmgavveaf
kqlnanlpptltdsqvssvrkslkmqlqtllknrgafefastirgmlvdlgsstneiqkl
ipkmdkqemarrqkrilena

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6npwD (D:)
gpgsgmtdpsklavavvdssnmnrsmeahnflakkgfnvrsygtgervklpgmafdkpnv
yefgtkyediyrdleskdkefytqngllhmldrnrrikkcperfqdtkeqfdiivtveer
vydlvvmhmesmesvdnrpvhvlnvdvvnnaedalmgafvitdminmmakstdldndide
liqefeerrkrvilhsvlfy

    Sequence, based on observed residues (ATOM records):
    >6npwD (D:)
psklavavvdssnmnrsmeahnflakkgfnvrsygtgervklpgmafdkpnvyefgtkye
diyrdleskdkefytqngllhmldrnrrikkcperfqdtkeqfdiivtveervydlvvmh
mesmesvdnrpvhvlnvdvvnnaedalmgafvitdminmmakstdldndideliqefeer
rkrvilhsvlfy

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6npwE (E:)
spsysptspsysptspsys

    Sequence, based on observed residues (ATOM records):
    >6npwE (E:)
ptsps