PDB entry 6nn3

View 6nn3 on RCSB PDB site
Description: structure of parvovirus b19 decorated with fab molecules from a human antibody
Deposited on 2019-01-14, released 2019-02-13
The last revision was dated 2020-03-04, with a file datestamp of 2020-02-28.
Experiment type: EM
Resolution: 3.22 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VP2 of B19 parvovirus
    Species: Human parvovirus B19 [TaxId:10798]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q75U93 (Start-553)
      • conflict (322)
  • Chain 'H':
    Compound: Fab monoclonal antibody 860-55D, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6NN3 (0-120)
  • Chain 'L':
    Compound: Fab monoclonal antibody 860-55D, light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6NN3 (0-101)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6nn3A (A:)
mtsvnsaeastgagggssnpvksmwsegatfsansvtctfsrqflipydpehhykvfspa
asschnasgkeakvctispimgystpwryldfnalnlffsplefqhlienygsiapdalt
vtiseiavkdvtdktgggvqvtdsttgrlcmlvdheykypyvlgqgqdtlapelpiwvyf
ppqyayltvgdvntqgisgdskklaseesafyvlehssfqllgtggtatmsykfppvppe
nlegcsqhfyemynplygsrlgvpdtlggdpkfrslthedhaiqpqnfmpgplvnsvstk
egdssntgagkaltglstgtsqntrislrpgpvsqpyhhwdtdkyvtginaishgqttyg
naedkeyqqgvgrfpnekeqlkqlqglnmhtyfpnkgtqqytdqierplmvgsvwnrral
hyesqlwskipnlddsfktqfaalggwglhqpppqiflkilpqsgpiggiksmgittlvq
yavgimtvtmtfklgprkatgrwnpqpgvypphaaghlpyvlydptatdakqhhrhgyek
peelwtaksrvhpl

    Sequence, based on observed residues (ATOM records):
    >6nn3A (A:)
vksmwsegatfsansvtctfsrqflipydpehhykvfspaassspimgystpwryldfna
lnlffsplefqhlienygsiapdaltvtiseiavkdvtdktgggvqvtdsttgrlcmlvd
heykypyvlgqgqdtlapelpiwvyfppqyayltvgdvntqgisgdskklaseesafyvl
ehssfqllgtggtatmsykfppvppenlegcsqhfyemynplygsrlgvpdtlggdpkfr
slthedhaiqpqnfmpgplvnsvstltglstgtsqntrislrpgpvsqpyhhwdtdkyvt
ginaishgqgvgrfpnekeqlkqlqglnmhtyfpnkytdqierplmvgsvwnrralhyes
qlwskipnlddsfktqfaalggwglhqpppqiflkilpqsgpiggiksmgittlvqyavg
imtvtmtfklgprkatgrwnpqpgvypphaaghlpyvlydhgyekpeelwtaksrvhpl

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6nn3H (H:)
qvqlqesgpglvrpsqtlslsctvsgasissggyywswirqhpgkglewighiyysgtvy
ynpslrsrvsisidnqlslkvasvtaadtavyycarvrvdsvrgagdngfdpwghgtlvt
v

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6nn3L (L:)
aaaltqplsvsvspgqtaiftcsgdnlgdkyvywfqqrpgqspalliyqdnkrpsgiper
fsgsnsgntatltisgtqstdeadyycqtwdstvvfgggtkl