PDB entry 6nm9

View 6nm9 on RCSB PDB site
Description: cryoem structure of the lbcas12a-crrna-acrva4 dimer
Deposited on 2019-01-10, released 2019-06-12
The last revision was dated 2019-06-26, with a file datestamp of 2019-06-21.
Experiment type: EM
Resolution: 3.38 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AcrVA4
    Species: Moraxella bovoculi [TaxId:386891]
    Gene: AAX07_09545
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Cpf1
    Species: Lachnospiraceae bacterium ND2006 [TaxId:1410628]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A182DWE3 (1-1226)
      • expression tag (0)
      • conflict (111-112)
      • conflict (130-131)
      • conflict (263)
      • conflict (268)
      • conflict (356)
      • conflict (1084)
  • Chain 'C':
    Compound: AcrVA4
    Species: Moraxella bovoculi [TaxId:386891]
    Gene: AAX07_09545
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Cpf1
    Species: Lachnospiraceae bacterium ND2006 [TaxId:1410628]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A182DWE3 (1-1226)
      • expression tag (0)
      • conflict (111-112)
      • conflict (130-131)
      • conflict (263)
      • conflict (268)
      • conflict (356)
      • conflict (1084)
  • Chain 'E':
    Compound: RNA (25-mer)
    Species: Lachnospiraceae bacterium ND2006, synthetic [TaxId:1410628]
  • Chain 'G':
    Compound: RNA (25-mer)
    Species: Lachnospiraceae bacterium ND2006, synthetic [TaxId:1410628]
  • Heterogens: MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6nm9A (A:)
myeiklndtlihqtddrvnafvayryllrrgdlpkceniarmyydgkviktdvidhdsvh
sdeqakvsnndiikmaiselgvnnfkslikkqgypfsnghinswftddpvksktmhndem
ylvvqaliraciikeidlyteqlyniikslpydkrpnvvysdqpldpnnldlsepelwae
qvgecmryahndqpcfyigstkrelrvnyivpvigvrdeiervmtleevrnlhk

    Sequence, based on observed residues (ATOM records):
    >6nm9A (A:)
mylvvqaliraciikeidlyteqlyniikslpydkrpnvvysdqpldpnnldlsepelwa
eqvgecmryahndqpcfyigstkrelrvnyivpvigvrdeiervmtleevrnlhk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6nm9B (B:)
msklekftncyslsktlrfkaipvgktqenidnkrllvedekraedykgvkklldryyls
findvlhsiklknlnnyislfrkktrtekenkelenleinlrkeiakafkgnegykslfk
kdiietilpeflddkdeialvnsfngfttaftgffdnrenmfseeakstsiafrcinenl
tryisnmdifekvdaifdkhevqeikekilnsdydvedffegeffnfvltqegidvynai
iggfvtesgekikglneyinlynqktkqklpkfkplykqvlsdreslsfygegytsdeev
levfrntlnknseifssikkleklfknfdeyssagifvkngpaistiskdifgewnvird
kwnaeyddihlkkkavvtekyeddrrksfkkigsfsleqlqeyadadlsvveklkeiiiq
kvdeiykvygsseklfdadfvlekslkkndavvaimkdlldsvksfenyikaffgegket
nrdesfygdfvlaydillkvdhiydairnyvtqkpyskdkfklyfqnpqfmggwdkdket
dyratilrygskyylaimdkkyakclqkidkddvngnyekinykllpgpnkmlpkvffsk
kwmayynpsediqkiykngtfkkgdmfnlndchklidffkdsisrypkwsnaydfnfset
ekykdiagfyreveeqgykvsfesaskkevdklveegklymfqiynkdfsdkshgtpnlh
tmyfkllfdennhgqirlsggaelfmrraslkkeelvvhpanspianknpdnpkktttls
ydvykdkrfsedqyelhipiainkcpknifkintevrvllkhddnpyvigidrgernlly
ivvvdgkgniveqyslneiinnfngiriktdyhslldkkekerfearqnwtsienikelk
agyisqvvhkicelvekydavialedlnsgfknsrvkvekqvyqkfekmlidklnymvdk
ksnpcatggalkgyqitnkfesfksmstqngfifyipawltskidpstgfvnllktkyts
iadskkfissfdrimyvpeedlfefaldyknfsrtdadyikkwklysygnririfrnpkk
nnvfdweevcltsaykelfnkyginyqqgdirallceqsdkafyssfmalmslmlqmrns
itgrtdvdflispvknsdgifydsrnyeaqenailpknadangayniarkvlwaigqfkk
aedekldkvkiaisnkewleyaqtsvk

    Sequence, based on observed residues (ATOM records):
    >6nm9B (B:)
msklekftncyslsktlrfkaipvgktqenidnkrllvedekraedykgvkklldryyls
findvlhsiklknlnnyislfrkktrtekenkelenleinlrkeiakafkgnegykslfk
kdiietilpeflddkdeialvnsfngfttaftgffdnrenmfseeakstsiafrcinenl
tryisnmdifekvdaifdkhevqeikekilnsdydvedffegeffnfvltqegidvynai
iggfvtesgekikglneyinlynqktkqklpkfkplykqvegytsdeevlevfrntlnkn
seifssikkleklfknfdeyssagifvkngpaistiskdifgewnvirdkwnaeyddihl
kkkavvtekyeddrrksfkkigsfsleqlqeyadadlsvveklkeiiiqkvdeiykvygs
seklfdadfvlekslkkndavvaimkdlldsvksfenyikaffgeketnrdesfygdfvl
aydillkvdhiydairnyvtqkpyskdkfklyfqnpqfmggwdkdketdyratilrygsk
yylaimdkkyakclqkidkddvngnyekinykllpgpnkmlpkvffskkwmayynsediq
kiykngtfkkgdmfnlndchklidffkdsisrypkwsnaydfnfsetekykdiagfyrev
eeqgykvsfesaskkevdklveegklymfqiynkdfsdkshgtpnlhtmyfkllfdennh
gqirlsggaelfmrraslkkeelvvhpanspianknpdnpkktttlsydvykdkrfsedq
yelhipiainkcpknifkintevrvllkhddnpyvigidrgernllyivvvdgkgniveq
yslneiinnfngiriktdyhslldkkekerfearqnwtsienikelkagyisqvvhkice
lvekydavialedlnsgfknsrvkvekqvyqkfekmlidklnymvdkksnpcatggalkg
yqitnkfesfksmstqngfifyipawltskidpstgfvnllktkytsiadskkfissfdr
imyvpeedlfefaldyknfsrtdadyikkwklysygnririffdweevcltsaykelfnk
yginyqqdirallceqsdkafyssfmalmslmlqmrnsitgrtdvdflispvknsdgify
dsrnyeaqenailpknadangayniarkvlwaigqfkkaedekldkvkiaisnkewleya
qtsvk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6nm9C (C:)
myeiklndtlihqtddrvnafvayryllrrgdlpkceniarmyydgkviktdvidhdsvh
sdeqakvsnndiikmaiselgvnnfkslikkqgypfsnghinswftddpvksktmhndem
ylvvqaliraciikeidlyteqlyniikslpydkrpnvvysdqpldpnnldlsepelwae
qvgecmryahndqpcfyigstkrelrvnyivpvigvrdeiervmtleevrnlhk

    Sequence, based on observed residues (ATOM records):
    >6nm9C (C:)
mylvvqaliraciikeidlyteqlyniikslpydkrpnvvysdqpldpnnldlsepelwa
eqvgecmryahndqpcfyigstkrelrvnyivpvigvrdeiervmtleevrnlhk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6nm9D (D:)
msklekftncyslsktlrfkaipvgktqenidnkrllvedekraedykgvkklldryyls
findvlhsiklknlnnyislfrkktrtekenkelenleinlrkeiakafkgnegykslfk
kdiietilpeflddkdeialvnsfngfttaftgffdnrenmfseeakstsiafrcinenl
tryisnmdifekvdaifdkhevqeikekilnsdydvedffegeffnfvltqegidvynai
iggfvtesgekikglneyinlynqktkqklpkfkplykqvlsdreslsfygegytsdeev
levfrntlnknseifssikkleklfknfdeyssagifvkngpaistiskdifgewnvird
kwnaeyddihlkkkavvtekyeddrrksfkkigsfsleqlqeyadadlsvveklkeiiiq
kvdeiykvygsseklfdadfvlekslkkndavvaimkdlldsvksfenyikaffgegket
nrdesfygdfvlaydillkvdhiydairnyvtqkpyskdkfklyfqnpqfmggwdkdket
dyratilrygskyylaimdkkyakclqkidkddvngnyekinykllpgpnkmlpkvffsk
kwmayynpsediqkiykngtfkkgdmfnlndchklidffkdsisrypkwsnaydfnfset
ekykdiagfyreveeqgykvsfesaskkevdklveegklymfqiynkdfsdkshgtpnlh
tmyfkllfdennhgqirlsggaelfmrraslkkeelvvhpanspianknpdnpkktttls
ydvykdkrfsedqyelhipiainkcpknifkintevrvllkhddnpyvigidrgernlly
ivvvdgkgniveqyslneiinnfngiriktdyhslldkkekerfearqnwtsienikelk
agyisqvvhkicelvekydavialedlnsgfknsrvkvekqvyqkfekmlidklnymvdk
ksnpcatggalkgyqitnkfesfksmstqngfifyipawltskidpstgfvnllktkyts
iadskkfissfdrimyvpeedlfefaldyknfsrtdadyikkwklysygnririfrnpkk
nnvfdweevcltsaykelfnkyginyqqgdirallceqsdkafyssfmalmslmlqmrns
itgrtdvdflispvknsdgifydsrnyeaqenailpknadangayniarkvlwaigqfkk
aedekldkvkiaisnkewleyaqtsvk

    Sequence, based on observed residues (ATOM records):
    >6nm9D (D:)
msklekftncyslsktlrfkaipvgktqenidnkrllvedekraedykgvkklldryyls
findvlhsiklknlnnyislfrkktrtekenkelenleinlrkeiakafkgnegykslfk
kdiietilpeflddkdeialvnsfngfttaftgffdnrenmfseeakstsiafrcinenl
tryisnmdifekvdaifdkhevqeikekilnsdydvedffegeffnfvltqegidvynai
iggfvtesgekikglneyinlynqktkqklpkfkplykqvegytsdeevlevfrntlnkn
seifssikkleklfknfdeyssagifvkngpaistiskdifgewnvirdkwnaeyddihl
kkkavvtekyeddrrksfkkigsfsleqlqeyadadlsvveklkeiiiqkvdeiykvygs
seklfdadfvlekslkkndavvaimkdlldsvksfenyikaffgeketnrdesfygdfvl
aydillkvdhiydairnyvtqkpyskdkfklyfqnpqfmggwdkdketdyratilrygsk
yylaimdkkyakclqkidkddvngnyekinykllpgpnkmlpkvffskkwmayynsediq
kiykngtfkkgdmfnlndchklidffkdsisrypkwsnaydfnfsetekykdiagfyrev
eeqgykvsfesaskkevdklveegklymfqiynkdfsdkshgtpnlhtmyfkllfdennh
gqirlsggaelfmrraslkkeelvvhpanspianknpdnpkktttlsydvykdkrfsedq
yelhipiainkcpknifkintevrvllkhddnpyvigidrgernllyivvvdgkgniveq
yslneiinnfngiriktdyhslldkkekerfearqnwtsienikelkagyisqvvhkice
lvekydavialedlnsgfknsrvkvekqvyqkfekmlidklnymvdkksnpcatggalkg
yqitnkfesfksmstqngfifyipawltskidpstgfvnllktkytsiadskkfissfdr
imyvpeedlfefaldyknfsrtdadyikkwklysygnririffdweevcltsaykelfnk
yginyqqdirallceqsdkafyssfmalmslmlqmrnsitgrtdvdflispvknsdgify
dsrnyeaqenailpknadangayniarkvlwaigqfkkaedekldkvkiaisnkewleya
qtsvk

  • Chain 'E':
    No sequence available.

  • Chain 'G':
    No sequence available.